View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14006_low_20 (Length: 246)
Name: NF14006_low_20
Description: NF14006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14006_low_20 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 9 - 236
Target Start/End: Original strand, 54936314 - 54936537
Alignment:
| Q |
9 |
agactttgatcttgaatttgaaacacacaacatttatcttaaaatggtagccgttggatctatttgggagttggaatggaccatatagggctttccagtt |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
54936314 |
agactttgatcttgaatttgaaacacacaacatttatcttaaaatggtagccgttggatctatttgggagttggaatcg----tatagggctttccagtt |
54936409 |
T |
|
| Q |
109 |
cccactccaaccattttaattttcgacattattacgtacacgtcatggcaactaaactttcacatatgccacaaccagaggatctatgactatatatagt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54936410 |
cccactccaaccattttaattttcgacattattacgtacacgtcatggcaactaaactttcacatatgccacaaccagaggatctatgactatatatagt |
54936509 |
T |
|
| Q |
209 |
actttgcttccaaatactctttcctatg |
236 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
54936510 |
actttgcttccaaatactctttcctatg |
54936537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University