View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14006_low_30 (Length: 203)

Name: NF14006_low_30
Description: NF14006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14006_low_30
NF14006_low_30
[»] chr3 (7 HSPs)
chr3 (20-181)||(24982044-24982205)
chr3 (20-181)||(24497282-24497443)
chr3 (20-181)||(25085036-25085197)
chr3 (20-181)||(24923483-24923644)
chr3 (20-179)||(31825582-31825741)
chr3 (20-179)||(24919911-24920070)
chr3 (20-179)||(21584622-21584781)
[»] chr7 (4 HSPs)
chr7 (20-164)||(10575385-10575529)
chr7 (25-171)||(39954878-39955024)
chr7 (20-164)||(354402-354547)
chr7 (20-128)||(10580785-10580893)
[»] chr2 (1 HSPs)
chr2 (46-181)||(41027596-41027731)
[»] chr8 (1 HSPs)
chr8 (20-181)||(14261055-14261216)
[»] chr4 (3 HSPs)
chr4 (40-170)||(22898571-22898701)
chr4 (40-170)||(22950239-22950369)
chr4 (25-164)||(53328717-53328856)


Alignment Details
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 20 - 181
Target Start/End: Original strand, 24982044 - 24982205
Alignment:
Q  20 gaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacata 119  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24982044 gaagaggtggtgttaagagaatcagtggtttgatatatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacata 24982143  T
Q  120 cactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagac 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24982144 cactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagac 24982205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 20 - 181
Target Start/End: Complemental strand, 24497443 - 24497282
Alignment:
Q  20 gaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacata 119  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  24497443 gaagaggtggtgttaagagaatcagtggattgatctatgaagaaaccagaggtgtcttgaagatcttcttggaaaatgtgatccgtgatgcagttacata 24497344  T
Q  120 cactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagac 181  Q
    |||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||    
T  24497343 cactgagcacgcaaggaggaagactgtgacagccatggatgttgtctatgctttgaagagac 24497282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 20 - 181
Target Start/End: Original strand, 25085036 - 25085197
Alignment:
Q  20 gaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacata 119  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25085036 gaagaggtggtgtgaagagaatcagtggtttgatatatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtgatccgtgatgcagttacata 25085135  T
Q  120 cactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagac 181  Q
    |||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||    
T  25085136 cactgagcacgcaaggaggaagactgtgacagccatggatgttgtctatgctttgaagagac 25085197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 20 - 181
Target Start/End: Complemental strand, 24923644 - 24923483
Alignment:
Q  20 gaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacata 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||    
T  24923644 gaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcattcgtgatgctgtgacata 24923545  T
Q  120 cactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagac 181  Q
    |||||||||||| ||||||||||| || || |||||||||||||||||||||||||||||||    
T  24923544 cactgagcacgcaaggaggaagacagtgacagccatggatgttgtctatgctttgaagagac 24923483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 20 - 179
Target Start/End: Complemental strand, 31825741 - 31825582
Alignment:
Q  20 gaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacata 119  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  31825741 gaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaactagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcggtcacata 31825642  T
Q  120 cactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagag 179  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  31825641 cactgagcacgctaggaggaagacagttaccgcgatggatgttgtctatgctttgaagag 31825582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 20 - 179
Target Start/End: Complemental strand, 24920070 - 24919911
Alignment:
Q  20 gaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacata 119  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || |||||    
T  24920070 gaagaggtggtgtgaagagaatcagcggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttagagaatgtcattcgtgatgctgtgacata 24919971  T
Q  120 cactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagag 179  Q
    |||||||||||||||||||||||| || || ||||||||||| |||||||||||||||||    
T  24919970 cactgagcacgctaggaggaagacagtgacagccatggatgtcgtctatgctttgaagag 24919911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 179
Target Start/End: Complemental strand, 21584781 - 21584622
Alignment:
Q  20 gaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacata 119  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||  | ||||| |||||||||||||| || |||||||| ||||| ||    
T  21584781 gaagaggtggtgttaagagaatcagtggtttgatttatgaggaaacaagaggagttcttaagattttcttggagaatgtgattcgtgatgcggttacgta 21584682  T
Q  120 cactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagag 179  Q
    ||||||||| || |||||||||||||| || || ||||||||||| ||||||||||||||    
T  21584681 cactgagcatgcaaggaggaagactgtgactgctatggatgttgtttatgctttgaagag 21584622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 164
Target Start/End: Original strand, 10575385 - 10575529
Alignment:
Q  20 gaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacata 119  Q
    ||||||| ||||| || ||||||||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||||| ||  | ||||| ||||| ||    
T  10575385 gaagaggaggtgtgaaaagaatcagtggattgatctatgaggaaacaagaggtgtgttgaagatcttcttggagaatgttataagagatgctgttactta 10575484  T
Q  120 cactgagcacgctaggaggaagactgttaccgccatggatgttgt 164  Q
    ||||||||| || |||||||| ||||| || || |||||||||||    
T  10575485 cactgagcatgcgaggaggaaaactgtgactgctatggatgttgt 10575529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 25 - 171
Target Start/End: Complemental strand, 39955024 - 39954878
Alignment:
Q  25 ggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacatacactg 124  Q
    |||||||| ||||||||||| ||| | ||||| ||||| ||  | |||||  | ||||||||  | |||||||| || |||||||| ||||| |||||||    
T  39955024 ggtggtgtgaagagaatcagcggtctcatctacgaagagactcgcggtgttctcaagatctttcttgagaatgtgattcgtgatgctgttacttacactg 39954925  T
Q  125 agcacgctaggaggaagactgttaccgccatggatgttgtctatgct 171  Q
    |||| ||||||||||| ||||||||||||||||||||||| ||||||    
T  39954924 agcatgctaggaggaaaactgttaccgccatggatgttgtgtatgct 39954878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 20 - 164
Target Start/End: Original strand, 354402 - 354547
Alignment:
Q  20 gaagaggtggtgttaagagaatcagtggtttga-tctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacat 118  Q
    ||||||||||||| ||||| ||||||||||| | ||||||| ||||  ||||| || |||||||| |||||| ||||||  ||  ||||||| ||||| |    
T  354402 gaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttactt 354501  T
Q  119 acactgagcacgctaggaggaagactgttaccgccatggatgttgt 164  Q
    |||||||||| || |||||||||||| | || || |||||||||||    
T  354502 acactgagcatgcaaggaggaagactctgactgctatggatgttgt 354547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 128
Target Start/End: Original strand, 10580785 - 10580893
Alignment:
Q  20 gaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacata 119  Q
    |||||| |||||| ||||| |||||||||||||||||||| ||||  |||||  | |||||||| |||||| |||||   || | |||||| ||||| ||    
T  10580785 gaagagttggtgtgaagaggatcagtggtttgatctatgaggaaataagaggactgttgaagattttcttgcagaataagattcttgatgctgttactta 10580884  T
Q  120 cactgagca 128  Q
    |||||||||    
T  10580885 cactgagca 10580893  T

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Target: chr2 (Bit Score: 64; Significance: 3e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 46 - 181
Target Start/End: Original strand, 41027596 - 41027731
Alignment:
Q  46 ggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacatacactgagcacgctaggaggaagactg 145  Q
    ||||||||||| ||||| ||  | || || ||||||||||| ||||||||||| || |||||||| ||||| ||||| |||||||||||||| |||||||    
T  41027596 ggtttgatctacgaagagacacgtggcgtgttgaagatctttttggagaatgttattcgtgatgctgttacttacacagagcacgctaggagaaagactg 41027695  T
Q  146 ttaccgccatggatgttgtctatgctttgaagagac 181  Q
    |||| || ||||||||||| ||||| ||||||||||    
T  41027696 ttactgctatggatgttgtttatgcattgaagagac 41027731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 5e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 20 - 181
Target Start/End: Complemental strand, 14261216 - 14261055
Alignment:
Q  20 gaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacata 119  Q
    ||||||| ||||| ||||||||||| || ||||| |||||||||||  | ||||| |||||||| |||||||||||||| ||  | ||||| ||||| ||    
T  14261216 gaagaggaggtgtgaagagaatcagcgggttgatttatgaagaaactcgcggtgtgttgaagattttcttggagaatgtgataagagatgctgttacgta 14261117  T
Q  120 cactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagac 181  Q
     ||||| || || ||||||||||| ||||| || ||||||||||| ||||| ||||||||||    
T  14261116 tactgaacatgcgaggaggaagacggttactgctatggatgttgtttatgcgttgaagagac 14261055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 170
Target Start/End: Original strand, 22898571 - 22898701
Alignment:
Q  40 atcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacatacactgagcacgctaggagga 139  Q
    |||||||||||||| ||||| || ||  | || || |||||||| || ||||||||||| ||  | ||||| || || ||||||||||||||||| ||||    
T  22898571 atcagtggtttgatttatgaggagacacgtggcgtgttgaagatatttttggagaatgtgattagagatgctgtgacttacactgagcacgctagaagga 22898670  T
Q  140 agactgttaccgccatggatgttgtctatgc 170  Q
    |||| ||||| || |||||||| || |||||    
T  22898671 agacggttactgctatggatgtggtttatgc 22898701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 170
Target Start/End: Original strand, 22950239 - 22950369
Alignment:
Q  40 atcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacatacactgagcacgctaggagga 139  Q
    |||||||||||||| ||||| || ||  | || || |||||||| || ||||||||||| ||  | ||||| || || ||||||||||||||||| ||||    
T  22950239 atcagtggtttgatttatgaggagacacgtggcgtgttgaagatatttttggagaatgtgattagagatgctgtgacttacactgagcacgctagaagga 22950338  T
Q  140 agactgttaccgccatggatgttgtctatgc 170  Q
    |||| ||||| || |||||||| || |||||    
T  22950339 agacggttactgctatggatgtggtttatgc 22950369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 164
Target Start/End: Original strand, 53328717 - 53328856
Alignment:
Q  25 ggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacatacactg 124  Q
    |||||||| ||| | |||||||| || ||||||||||||||  | || ||  | ||||||||  | |||||||| || |||||||| || |||||||| |    
T  53328717 ggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttgagaatgtgattcgtgatgctgtcacatacacag 53328816  T
Q  125 agcacgctaggaggaagactgttaccgccatggatgttgt 164  Q
    |||| ||| |  | ||||||||||| || |||||||||||    
T  53328817 agcatgctcgccgtaagactgttactgcaatggatgttgt 53328856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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