View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14006_low_31 (Length: 202)
Name: NF14006_low_31
Description: NF14006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14006_low_31 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 5e-98; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 42577966 - 42577778
Alignment:
| Q |
14 |
cactatttgcaccacaagattttaatgcatgcatcaaaaagaactatcgaaatgctcccgtaaaaataatgaacaaatgctaaaatgagtagcataacat |
113 |
Q |
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| T |
42577966 |
cactatttgcaccacaagattttaatgcatgcatcaaaaagaactatcgaaatgctccggtaaaaataatgaacaaatgctaaaatgagtagcataacat |
42577867 |
T |
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| Q |
114 |
aaacaaccagttaaaggaactaaactcaccataatctttttaggcagtgtatcgttcttttccttgttgaaatcatctaaagtaatttt |
202 |
Q |
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| T |
42577866 |
aaacaaccagttaaatgaactaaactcaccataatctttttaggcagtgtatcgttcttttccttgttgaaatcatctaaagtaatttt |
42577778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 28 - 202
Target Start/End: Complemental strand, 42570765 - 42570592
Alignment:
| Q |
28 |
caagattttaatgcatgcatcaaaaagaactatcgaaatgctcccgtaaaaataatgaacaaatgctaaaatgagtagcataacataaacaaccagttaa |
127 |
Q |
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| T |
42570765 |
caagattttaatgcatgcctaaaacagaactatcgaaatgctcctattaaaataatgaaccaatgctaaa-tgagtaacatagcataaacaaccagttaa |
42570667 |
T |
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| Q |
128 |
aggaactaaactcaccataatctttttaggcagtgtatcgttcttttccttgttgaaatcatctaaagtaatttt |
202 |
Q |
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| T |
42570666 |
aggtactaaactcaccataattttcttaggcagtgtatcgttcttttccttgttgaaatcatctaaagtaatttt |
42570592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 89 - 151
Target Start/End: Complemental strand, 42573077 - 42573015
Alignment:
| Q |
89 |
aatgctaaaatgagtagcataacataaacaaccagttaaaggaactaaactcaccataatctt |
151 |
Q |
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| T |
42573077 |
aatgctaaaatgagtagcatagcacaaacaaccagttcaaggaactaaactcaccataatctt |
42573015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 97 - 160
Target Start/End: Complemental strand, 42594572 - 42594509
Alignment:
| Q |
97 |
aatgagtagcataacataaacaaccagttaaaggaactaaactcaccataatctttttaggcag |
160 |
Q |
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| T |
42594572 |
aatgactagcatagtataaacaaccaattcaaggaactaaactcaccacaacgtttttaggcag |
42594509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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