View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14006_low_32 (Length: 202)
Name: NF14006_low_32
Description: NF14006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14006_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 6e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 736597 - 736768
Alignment:
| Q |
15 |
aatatcccaccaaggtagggagccagcgtcgatcgtatggcatgctgaaaataggtcaccactcctaattcagcggaagttacgcgacgtcagtagttac |
114 |
Q |
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| T |
736597 |
aatatcccaccaaggtagggagccagcgtcgatcgtatggcatgctgaaaataggtcaccactcctaattcagcggaaggtacgcgacgtcagtagttac |
736696 |
T |
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| Q |
115 |
gtcgcaacagcaccttccagttttggccctcctcgttacttgaagtcgctgatgtagagagaagggggtttc |
186 |
Q |
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| T |
736697 |
gtcgcgacaacaccttccagttttggccctcctcgttacttgaagtcaccgatgcagagagaagagggtttc |
736768 |
T |
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Target: chr8 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 17 - 186
Target Start/End: Complemental strand, 11420989 - 11420820
Alignment:
| Q |
17 |
tatcccaccaaggtagggagccagcgtcgatcgtatggcatgctgaaaatagg-tcaccactcctaattcagcggaagttacgcgacgtcagtagttacg |
115 |
Q |
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| T |
11420989 |
tatccccccagggtatggagccagcgacgatcgtatagcatgctgaaattagggtcacaactcctaattcagtggaaggtacgcgacgtcagtagttacg |
11420890 |
T |
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| Q |
116 |
tcgcaacagcaccttccagttttggccctcctcgttacttgaagtcgctgatgtagagagaagggggtttc |
186 |
Q |
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| T |
11420889 |
ccgcgacgactgcttctagttttggccctactcg-tacttgaagtctccgatgcggagagaagggggtttc |
11420820 |
T |
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Target: chr5 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 28 - 186
Target Start/End: Original strand, 19028804 - 19028962
Alignment:
| Q |
28 |
ggtagggagccagcgtcgatcgtatggcatgctgaaaatagg-tcaccactcctaattcagcggaagttacgcgacgtcagtagttacgtcgcaacagca |
126 |
Q |
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|||| ||||||||||||| |||||| ||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||| || ||||| |
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| T |
19028804 |
ggtatggagccagcgtcgttcgtatagcatgctgaaattagggtcaccactcctaattcagcggaaggtacgcgacgtcagtagttacgccgtgacagct |
19028903 |
T |
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| Q |
127 |
ccttccagttttggccctcctcgttacttgaagtcgctgatgtagagagaagggggtttc |
186 |
Q |
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||| ||||||| ||||| || |||||||||||| | ||| |||||||||||||||| |
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| T |
19028904 |
gctttcagttttagccctaatc-ttacttgaagtcaccgatacggagagaagggggtttc |
19028962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 186
Target Start/End: Original strand, 41000590 - 41000681
Alignment:
| Q |
94 |
ttacgcgacgtcagtagttacgtcgcaacagcaccttccagttttggccctcctcgttacttgaagtcgctgatgtagagagaagggggtttc |
186 |
Q |
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||||||||||||| |||||||| ||| || || |||||| |||||||||| || |||||||||||| | |||| |||||||||||||||| |
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| T |
41000590 |
ttacgcgacgtcaatagttacgccgcgacggctgcttccaattttggccctaatc-ttacttgaagtcaccgatgcggagagaagggggtttc |
41000681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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