View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14006_low_5 (Length: 461)
Name: NF14006_low_5
Description: NF14006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14006_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 16 - 441
Target Start/End: Complemental strand, 4672678 - 4672247
Alignment:
| Q |
16 |
atagactagtgattcatatatattgttactgatggattctgtggataaattccaatccaaccagttattcacattctcaagattaaagagtaataatgtc |
115 |
Q |
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| T |
4672678 |
atagactagtgattcatat----tgttactgatggattctgtggataacttccaatccaaccagttattcacattctcaagattaaagagtaataatgtc |
4672583 |
T |
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| Q |
116 |
cgatcaaacccttgtagctatttcacagtctcaagtaat---gcatactcgattcaggaaagccattacatcttggtcgtcatatgttggatgtcatcat |
212 |
Q |
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| T |
4672582 |
cgatcaaacccttgtagctatttcacagtctcaagtaataatgcatactcgattcaggaaagtcattacatcttggtcgtcatatgttggatgtcatcat |
4672483 |
T |
|
| Q |
213 |
gttacgatactttgtgctcatcatttgtgatcaaacgacgatgtcaacttccacacaaaaaatataa-----atatcaattcagttgggacattttcaat |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||| |||||||||||| |
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| T |
4672482 |
gttacgatactttgtgctcatcatttgtgatcaaacgacgatgtcaacttccacacaaaaaaaaaaaataatatatcaattcagttgagacattttcaat |
4672383 |
T |
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| Q |
308 |
gccagaatttatgaaagaagagattaacgtaaga-tcattctatggtggttttccattgccccccattcgttgtttttatggaaaaaaggtaataatttc |
406 |
Q |
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| T |
4672382 |
gccagaatttatgaaagaagagattaacgtaagagtcattctatggtggttttccattgccccccattcgttgtttttatggaaaaaaggtaataatttc |
4672283 |
T |
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| Q |
407 |
caacacggaaaatatgataaa-ctagtgagggaggt |
441 |
Q |
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| T |
4672282 |
caacacggaaaatatgataaacctagtgagggaggt |
4672247 |
T |
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