View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14006_low_7 (Length: 405)
Name: NF14006_low_7
Description: NF14006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14006_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 13 - 387
Target Start/End: Original strand, 7339949 - 7340318
Alignment:
| Q |
13 |
aatatatgagttccacatcactttctataatggcaataagttgtgaaccaccctcatctataaccagagcatgcactgcagaaggatttaatagttggtg |
112 |
Q |
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| T |
7339949 |
aatatatgagttccacatcactttctataatggcaataagttgtgaaccaccctcatctataaccagagcatgcactgcagaaggatttaatagttggtg |
7340048 |
T |
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| Q |
113 |
agcacagaagtcatctctttaaactccaaatactttctaagattctcaagtgtttcttccattctcttcgcgatggttttaaaattggatgtatgatgta |
212 |
Q |
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| T |
7340049 |
agcacagaagtcatctctttaaactccaaatactttctaagattctcaagtgtttcttccattctcttcgcgatggttttaaaattggatgtatgatgta |
7340148 |
T |
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| Q |
213 |
tcttaattcacggtgtatcttaacttaaccagcataaatagaattttcaccaaatttcagcaaataatgcctgtattttaataccagtgcaatctcaaga |
312 |
Q |
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| T |
7340149 |
tcttaattcacggtgtat-----cttaaccagcataaacagaattttcaccaaatttcagcaaataatgcctgtattttaataccagtgcaatctcaaga |
7340243 |
T |
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| Q |
313 |
ggtgtgattactactcccattagtaaatatattttccacaacttatatatggacatacagacttcacgatctcct |
387 |
Q |
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| T |
7340244 |
ggtgtgattactactcccattagtaaatatattttccacaacttatatatggacatacagacttcacgatctcct |
7340318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 387
Target Start/End: Original strand, 1547948 - 1548052
Alignment:
| Q |
275 |
aataatgcctgtattttaataccagtgcaatctcaagaggtgtgattactactcccattagtaaatatattttccacaacttatatatggacatacagac |
374 |
Q |
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| T |
1547948 |
aataatgcttgtattttaataccagtgcaattt--------gtgaccacttctccctttagtaaacatgtttttcacaacttatatatggacatataaac |
1548039 |
T |
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| Q |
375 |
ttcacgatctcct |
387 |
Q |
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|||| |||||||| |
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| T |
1548040 |
ttcatgatctcct |
1548052 |
T |
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