View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14006_low_9 (Length: 369)
Name: NF14006_low_9
Description: NF14006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14006_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 19 - 360
Target Start/End: Original strand, 6083064 - 6083405
Alignment:
| Q |
19 |
gtcaatgaaggaacatctcgaggaatctatacaccaggaactaatttacgaagaaagagttgcgcatttggatcgtactctcaatgaatgtatgcggcag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6083064 |
gtcaatgaaggaacatctcgaggaatctatacaccaggaactaatttacgaagaaagagttgcgcatttggatcgtactctcaaggaatgtatgcggcag |
6083163 |
T |
|
| Q |
119 |
ttgcattttgttagagaggaacaagagcaaaggatttatgatgctgtaatgaaggtttctgtagaattcgatcaagctcgcgttgttttagaggagcagc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6083164 |
ttgcattttgttagagaggaacaagagcaaaggatttatgatgctgtaatgaaggtttctgtagaattcgatcaagctcgcgttgttttagaggagcagc |
6083263 |
T |
|
| Q |
219 |
tatcagagaaaagtaaaaggcttgctaaaactgtgattgaaaatccttatcttaacaaatctattagcgcgaaagacaatgtgagtgatgatctgagaag |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||| |
|
|
| T |
6083264 |
tatcagagaaaagtaaaaggcttgctaaaactgtgattgaaaattcttatcttaacaaatctattatcgcgaaagacaatttgattgatgatctgagaag |
6083363 |
T |
|
| Q |
319 |
acaattgaatcaagcagacgtggatcgtaatgcattgatgat |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6083364 |
acaattgaatcaagcagacgtggatcgtaatgcattgatgat |
6083405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 173
Target Start/End: Complemental strand, 39108298 - 39108188
Alignment:
| Q |
63 |
tttacgaagaaagagttgcgcatttggatcgtactctcaatgaatgtatgcggcagttgcattttgttagagaggaacaagagcaaaggatttatgatgc |
162 |
Q |
| |
|
|||| ||||||||||| || ||||||||| | |||| || |||||||||| |||||| | |||||| |||| ||||||| |||||||||| ||||||| |
|
|
| T |
39108298 |
tttatgaagaaagagtagcccatttggatggagctctgaaggaatgtatgcagcagttacgatttgttcgagaagaacaagggcaaaggattcatgatgc |
39108199 |
T |
|
| Q |
163 |
tgtaatgaagg |
173 |
Q |
| |
|
||| ||||||| |
|
|
| T |
39108198 |
tgtgatgaagg |
39108188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University