View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14007_high_3 (Length: 537)
Name: NF14007_high_3
Description: NF14007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14007_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 22 - 524
Target Start/End: Complemental strand, 44731578 - 44731076
Alignment:
| Q |
22 |
tcgacaactcaatctggggcgctccaccaccagcaatcaaaaacctcttaccaaccaaacacctaacaacacacaaagcatcatgcaaactcctctacgc |
121 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
44731578 |
tcgacaactcaatctcgggcgctccaccaccagcaatcaaaaacctcttaccaaccaaacacctaacaacacacaaagcatcatgcaaactcctctgcgc |
44731479 |
T |
|
| Q |
122 |
ttcatcaagcacaagcaagttggatccacgaacaagcacagttttggtctt-acccatatccttaacacctgaaatctttacaatcttcccatcatcccc |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
44731478 |
ttcatcaagcacaagcaagttggatccacgaacaagcacagttgtggtctttacccatatccttaacacctgaaatctt-acaatcttcccatcatcccc |
44731380 |
T |
|
| Q |
221 |
aagagcaacctcctccacaagatcagcataacccaacatctctttacaaaaatgctcaatattagccaataggcaaacaattaagtgtcttggtaataat |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44731379 |
aagagcaacctcctccacaagatcagcataacccaacttctctttacaaaaatgctcaatattagccaataggcaaacaattaagtgtcttggtaataat |
44731280 |
T |
|
| Q |
321 |
cttaatctcatcgcattcaacatccttaatcaccaaaatgttagttttagcaagataatgcaaagacaaatcagtagcagcatcactcaaaatactctcc |
420 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44731279 |
ctcaatctcattgcattcaacatccttaatcaccaaaatgttagctttagcaagataatgcaaagacaaatcagtagcagcatcactcaaaatactctcc |
44731180 |
T |
|
| Q |
421 |
tcctgagtcaacaacacattacatccagatgctttaatcttatcaatcatacccaacatataacttctatcttccttcaaaatcctatccatttgagaat |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44731179 |
tcctgagtcaacaacacattacatccagatgctttaatcttatcaatcatacccaacatataacttctatcttccttcaaaatcctatccatttgagaat |
44731080 |
T |
|
| Q |
521 |
aatc |
524 |
Q |
| |
|
|||| |
|
|
| T |
44731079 |
aatc |
44731076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 45 - 524
Target Start/End: Complemental strand, 50702094 - 50701622
Alignment:
| Q |
45 |
ccaccaccagcaatcaaaaacctcttaccaaccaaacacctaacaacacacaaagcatcatgcaaactcctctacgcttcatcaagcacaagcaagttgg |
144 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| | || |||||||| ||||||||||| || | |
|
|
| T |
50702094 |
ccaccacctgcaatcaaaaacctcttggcaaccaaacacctaacaacacacaaagcatcatgcagacttcgctcagcttcatcgagcacaagcaaattag |
50701995 |
T |
|
| Q |
145 |
atccacgaacaagcacagttttggtcttacccatatccttaacacctgaaatctttacaatcttcccatcatccccaagagcaacctcctccacaagatc |
244 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||||| ||| |||||||| |||||||||||||| |||||||| || ||| || |||||||| |
|
|
| T |
50701994 |
atccacgaacaagcacagttgtggtctttcccatatccttaataccagaaatcttcacaatcttcccatc---cccaagagaaagctcttctacaagatc |
50701898 |
T |
|
| Q |
245 |
agcataacccaacatctctttacaaaaatgctcaatattagccaataggcaaacaattaagtgtcttggtaataatcttaatctcatcgcattcaacatc |
344 |
Q |
| |
|
||||||||||||| |||| || |||||| ||||||||||| |||||||||||||||||| ||||||||||| | || |||||| || | |||||||| |
|
|
| T |
50701897 |
agcataacccaacttctcagcacgaaaatgttcaatattagc-aataggcaaacaattaagagtcttggtaatgaactcaatctcgtcacgctcaacatc |
50701799 |
T |
|
| Q |
345 |
cttaatcaccaaaatgttagttttagcaagataatgcaaagacaaatcagtagcagcatcactcaaaatactctcctcctgagtcaacaacacattacat |
444 |
Q |
| |
|
|||||||| ||||| |||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||| | || |||||||||||||||| |
|
|
| T |
50701798 |
tttaatcactaaaatcttagctttagcaagataatgcaaagacaaatcagtaacagcatctctcaaaatactctttt---gaatcaacaacacattacaa |
50701702 |
T |
|
| Q |
445 |
ccagatgctttaatcttatcaatcatacccaacatataacttctatcttccttcaaaatcctatccatttgagaataatc |
524 |
Q |
| |
|
|| | ||| || ||||| | |||||| || || |||||||| || ||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
50701701 |
ccggttgccttgatcttcttaatcatccctaaaatataactcctctcttccttcaaaatcctatccatctgagagtaatc |
50701622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 9e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 88 - 205
Target Start/End: Complemental strand, 20827156 - 20827039
Alignment:
| Q |
88 |
caacacacaaagcatcatgcaaactcctctacgcttcatcaagcacaagcaagttggatccacgaacaagcacagttttggtcttacccatatccttaac |
187 |
Q |
| |
|
|||||||||||||||| |||| ||| | || ||||||| ||||||||||| || ||||||||||||||||||||| ||||||| ||||||||| ||| |
|
|
| T |
20827156 |
caacacacaaagcatcgtgcagacttcgctcaccttcatcgagcacaagcaaattagatccacgaacaagcacagttgtggtctttcccatatccctaat |
20827057 |
T |
|
| Q |
188 |
acctgaaatctttacaat |
205 |
Q |
| |
|
||| |||||||| ||||| |
|
|
| T |
20827056 |
accagaaatcttcacaat |
20827039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 340 - 418
Target Start/End: Complemental strand, 20826854 - 20826776
Alignment:
| Q |
340 |
acatccttaatcaccaaaatgttagttttagcaagataatgcaaagacaaatcagtagcagcatcactcaaaatactct |
418 |
Q |
| |
|
||||| ||||||||||||| |||| |||| |||||||||||||||||||||||| | || |||| ||||||||||||| |
|
|
| T |
20826854 |
acatctttaatcaccaaaaacttagctttaacaagataatgcaaagacaaatcagcaacaacatctctcaaaatactct |
20826776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University