View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14007_high_4 (Length: 423)
Name: NF14007_high_4
Description: NF14007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14007_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 91; Significance: 6e-44; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 310 - 416
Target Start/End: Original strand, 26324471 - 26324576
Alignment:
| Q |
310 |
atcacgggtgaaaaaatatcataaggacgactcaccgttcgtctcctttccaaaaatccttttgttttggacctttaggcccttcccttggaccccaatt |
409 |
Q |
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| T |
26324471 |
atcacgggtgaaaaac-atcataagaacgactcaccgttcgtctcctttccaaaaatccttttgttttggacctttaggcccttcccttggaccccaatt |
26324569 |
T |
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| Q |
410 |
catctca |
416 |
Q |
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||||||| |
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| T |
26324570 |
catctca |
26324576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 26318680 - 26318766
Alignment:
| Q |
18 |
tttgtgctcttttgtgcctaggtgttttggcactccttgtactttagcaccaagagttgtttaatctatctatatattccattttggtttttt |
110 |
Q |
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| T |
26318680 |
tttgtgctcttttgtgcctaggcgttttggcactccttgtactttagcgcctagagttgtttaa------tatatattccattttggtttttt |
26318766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 37151214 - 37151158
Alignment:
| Q |
26 |
cttttgtgcctaggtgttttggcactccttgtactttagcaccaagagttgtttaat |
82 |
Q |
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| T |
37151214 |
cttttgtgcctaggcgttttggcactccttgtgctttagcgcctagagttgtttaat |
37151158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 227 - 264
Target Start/End: Original strand, 26324322 - 26324359
Alignment:
| Q |
227 |
attattacaaggcctaattgagatataaaatttctacc |
264 |
Q |
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| T |
26324322 |
attattacaaagcctaattgagatataaaatttctacc |
26324359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 110
Target Start/End: Original strand, 15475996 - 15476071
Alignment:
| Q |
29 |
ttgtgcctaggtgttttggcactccttgtactttagcaccaagagttgtttaatctatctatatattccattttggtttttt |
110 |
Q |
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||||||||||| |||||||||| |||||||||||||| || || ||||||||| ||||||||||||||||| ||||| |
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| T |
15475996 |
ttgtgcctaggggttttggcaccccttgtactttagcgcctagggttgtttaa------tatatattccattttggcttttt |
15476071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 39755480 - 39755427
Alignment:
| Q |
29 |
ttgtgcctaggtgttttggcactccttgtactttagcaccaagagttgtttaat |
82 |
Q |
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| T |
39755480 |
ttgtgcctaggcgttttggcactccttgtgctttagcatctagggttgtttaat |
39755427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 27441735 - 27441793
Alignment:
| Q |
24 |
ctcttttgtgcctaggtgttttggcactccttgtactttagcaccaagagttgtttaat |
82 |
Q |
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| T |
27441735 |
ctcttttgtgcctaggcgttttggcataccttgtgctttagcgtctagagttgtttaat |
27441793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 11771489 - 11771529
Alignment:
| Q |
24 |
ctcttttgtgcctaggtgttttggcactccttgtactttag |
64 |
Q |
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| T |
11771489 |
ctcttttgtgcctaggcgttttggcacaccttgtgctttag |
11771529 |
T |
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