View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14007_high_5 (Length: 414)
Name: NF14007_high_5
Description: NF14007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14007_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 18 - 407
Target Start/End: Original strand, 30274358 - 30274753
Alignment:
| Q |
18 |
gtgttgttgccaagcatcaccgaattcactctgtctactatagagcaattcaaccaaacatttctcgctttcggacaatcaaataacacacgagtcgcat |
117 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30274358 |
gtgttgttgctaagcatcaccgaattcactctgtctactatagagcaattcaaccaaacatttctcgctttcggacaatcaaataacacacgagtcgcat |
30274457 |
T |
|
| Q |
118 |
cctcgtaactctcctcacacatagcacacgtagaagggcaattcacc-----gtccaacagccttgcatgcgtcggcaaacatccgcgacaagacaaatt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
30274458 |
cctcgtaactctcctcacacatagcacacgtagaagggcaattcacccccttgtccaacagccttgcacgcgtcggcaaacatccgcgacaagacaaatt |
30274557 |
T |
|
| Q |
213 |
cgccataacaaatttttcactttcagagggaccttcaatctccaaatactagcccaattaccggggcaatgtaaaaatgaattat-cgcaatgactgcca |
311 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||| |||||||||||||| |
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| T |
30274558 |
cgccataacaaatttttcactttcggagggaccttcaatctccaaatactagcccaattaccagggcgatgtgaaaatgaattatccgcaatgactgcca |
30274657 |
T |
|
| Q |
312 |
tacacagccgatacacacttctaacagaataacgaccatttttctctaatttccaaattaacagccacttgactaatcagaggagttttaagaata |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30274658 |
tacacagccgatacacacttctaacagaataacgaccatttttctctaatttccaaattaacagccacttgactaatcagaggagttttaagaata |
30274753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 206 - 372
Target Start/End: Original strand, 14151209 - 14151376
Alignment:
| Q |
206 |
acaaattcgccataacaaatttttcactttcagagggaccttcaatctccaaatactagcccaattaccggggcaatgtaaaaatgaattat-cgcaatg |
304 |
Q |
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|||||||| ||| |||| || |||||||||| ||||||||||||| |||| ||||||| ||||||||| || | ||| ||||||||||||| |||||| |
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| T |
14151209 |
acaaattctccacaacagatctttcactttcggagggaccttcaaattccagatactagaccaattaccaggacgatgcaaaaatgaattatccgcaata |
14151308 |
T |
|
| Q |
305 |
actgccatacacagccgatacacacttctaacagaataacgaccatttttctctaatttccaaattaa |
372 |
Q |
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||| ||||| || | ||||| | |||||||| ||||||| ||||||||| ||||||||||||||||| |
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| T |
14151309 |
acttccatatacggtcgatatgcccttctaaccgaataacaaccatttttttctaatttccaaattaa |
14151376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 224 - 373
Target Start/End: Complemental strand, 32795007 - 32794857
Alignment:
| Q |
224 |
atttttcactttcagagggaccttcaatctccaaatactagcccaattaccggggcaatgtaaaaatgaattat-cgcaatgactgccatacacagccga |
322 |
Q |
| |
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|||| |||||||| ||| ||||| ||| | |||||||||| |||||||||||| | |||| ||||||||||| || || ||| |||||||||| ||| |
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| T |
32795007 |
atttctcactttcgaaggaacctttaattttcaaatactagaccaattaccgggacggtgtagaaatgaattattcgtgataacttccatacacagtcga |
32794908 |
T |
|
| Q |
323 |
tacacacttctaacagaataacgaccatttttctctaatttccaaattaac |
373 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||| ||| | |||||| |
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|
| T |
32794907 |
tacacacttctaacagaataatgaccatttttctctaaattctatattaac |
32794857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 29 - 138
Target Start/End: Original strand, 27040488 - 27040597
Alignment:
| Q |
29 |
aagcatcaccgaattcactctgtctactatagagcaattcaaccaaacatttctcgctttcggacaatcaaataacacacgagtcgcatcctcgtaactc |
128 |
Q |
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||||||||||||| ||||| ||||||| || || ||||| |||||||||||||| ||||| ||||||||||||| ||| |||||| ||||||||||| |
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| T |
27040488 |
aagcatcaccgaactcactttgtctaccattgaacaatttaaccaaacatttcttgctttaggacaatcaaatagaacatgagtcgtatcctcgtaacat |
27040587 |
T |
|
| Q |
129 |
tcctcacaca |
138 |
Q |
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|||||||||| |
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|
| T |
27040588 |
tcctcacaca |
27040597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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