View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14007_low_11 (Length: 254)

Name: NF14007_low_11

Description: NF14007

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF14007_low_11

[»] chr3 (2 HSPs)

Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 2)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 157; E-Value: 1e-83

Query Start/End: Original strand, 51 - 207

Target Start/End: Complemental strand, 10379119 - 10378963

Alignment:

Q	51	gcatgtatcatgttaacatgataatctaaatcagaaaagggttgtatgagagcaccaaacacaaacaaccatagattttggcatctagtatcctttattt	150	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	10379119	gcatgtatcatgttaacatgataatctaaatcagaaaagggttgtatgagagcaccaaacacaaacaaccatagattttggcatctagtatcctttattt	10379020	T

Q	151	gaaggattctctcggtagtaaggaaggaactccaattcttgcaagcaagcctaacat	207	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	10379019	gaaggattctctcggtagtaaggaaggaactccaattcttgcaagcaagcctaacat	10378963	T

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Target: chr3; HSP #2

Raw Score: 51; E-Value: 3e-20

Query Start/End: Original strand, 145 - 207

Target Start/End: Complemental strand, 10367500 - 10367438

Alignment:

Q	145	ttatttgaaggattctctcggtagtaaggaaggaactccaattcttgcaagcaagcctaacat	207	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|
T	10367500	ttatttgaaggattctctcagtggtaaggaaggaactccaattcttgcaaacaagcctaacat	10367438	T

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