View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14007_low_14 (Length: 239)
Name: NF14007_low_14
Description: NF14007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14007_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 51 - 223
Target Start/End: Complemental strand, 24710201 - 24710029
Alignment:
| Q |
51 |
aatcttcctgaggagaattagacgaccaattattattattcttgtcgaaggaacaacaatgttcttgaagcatagaacaaaagcaatattgcatatggat |
150 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24710201 |
aatcttcctgaggagaattagacgaccaattattattatttttgtcgaaggaacaacaatgttcttgaagcatagaacaaaagcaatattgcatatggat |
24710102 |
T |
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| Q |
151 |
caataaaacaatatagcacgctcaaatttaatgtagaannnnnnnnatcgatgcaagaacattatgttcttgc |
223 |
Q |
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| T |
24710101 |
caataaaacaatatagcatgctcaaatttaatgtagaattttttttatcgatgcaagaacattatgttcttgc |
24710029 |
T |
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Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 51 - 180
Target Start/End: Original strand, 22471911 - 22472038
Alignment:
| Q |
51 |
aatcttcctgaggagaattagacgaccaattattattattcttgtcgaaggaacaacaatgttcttgaagcatagaacaaaagcaatattgcatatggat |
150 |
Q |
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|||||||||||||||||||||| ||||||| || || || |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
22471911 |
aatcttcctgaggagaattagaagaccaatgttt-ttgtt-ttgtcgaaggaacaacaatgttcttgaagcatagaacaaaagcaattatgcatctggat |
22472008 |
T |
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| Q |
151 |
caataaaacaatatagcacgctcaaattta |
180 |
Q |
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| T |
22472009 |
taataaaacaatgtggcatgctcaaattta |
22472038 |
T |
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