View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14007_low_16 (Length: 236)

Name: NF14007_low_16
Description: NF14007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14007_low_16
NF14007_low_16
[»] chr7 (7 HSPs)
chr7 (1-232)||(33036188-33036419)
chr7 (189-236)||(27571703-27571750)
chr7 (189-232)||(38892254-38892297)
chr7 (192-232)||(27098991-27099031)
chr7 (192-232)||(27179272-27179312)
chr7 (189-236)||(31174572-31174619)
chr7 (189-236)||(23333406-23333453)
[»] chr4 (7 HSPs)
chr4 (190-236)||(18501935-18501981)
chr4 (192-236)||(23237619-23237663)
chr4 (189-236)||(27512854-27512901)
chr4 (189-232)||(4608056-4608099)
chr4 (189-236)||(18493895-18493942)
chr4 (189-236)||(22375998-22376045)
chr4 (189-236)||(39606399-39606446)
[»] chr2 (1 HSPs)
chr2 (187-236)||(2096032-2096081)
[»] chr5 (4 HSPs)
chr5 (196-236)||(42092397-42092437)
chr5 (189-236)||(39570764-39570811)
chr5 (190-232)||(6735844-6735886)
chr5 (189-236)||(12947397-12947444)
[»] chr1 (6 HSPs)
chr1 (192-236)||(26632930-26632974)
chr1 (189-236)||(44592518-44592565)
chr1 (189-236)||(27773485-27773532)
chr1 (189-232)||(43022452-43022495)
chr1 (189-236)||(50099538-50099585)
chr1 (190-236)||(36157055-36157100)
[»] chr8 (1 HSPs)
chr8 (187-236)||(33538462-33538511)
[»] chr3 (3 HSPs)
chr3 (189-236)||(22775363-22775410)
chr3 (189-236)||(37057456-37057503)
chr3 (197-236)||(37224332-37224371)
[»] chr6 (1 HSPs)
chr6 (190-236)||(7590597-7590643)


Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 33036419 - 33036188
Alignment:
Q  1 ctcactttatacatttttgttacgtgctagcacatctccttactttggaatcatagtgtctttcgcaggaacctccccatgtagaaggagcgtacgacca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33036419 ctcactttatacatttttgttacgtgctagcacatctccttactttggaatcatagtgtctttcgcaggaacctccccatgtagaaggagcgtacgacca 33036320  T
Q  101 accacgatggaccagatcaccaatgtgaagattacacttcatactctaaggcacactccatttattcacacaagaacattagcgtcctcaggggcgaatg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33036319 accacgatggaccagatcaccaatgtgaagattacacttcatactctaaggcacactccatttattcacacaagaacattagcgtccttaggggcgaatg 33036220  T
Q  201 cttgtacaacaaaggggtagctatggctaccc 232  Q
    ||||||||||||||||||||||||||||||||    
T  33036219 cttgtacaacaaaggggtagctatggctaccc 33036188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 189 - 236
Target Start/End: Complemental strand, 27571750 - 27571703
Alignment:
Q  189 caggggcgaatgcttgtacaacaaaggggtagctatggctaccccaaa 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27571750 caggggcgaatgcttgtacaacaaaggggtagctatggctaccccaaa 27571703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 232
Target Start/End: Complemental strand, 38892297 - 38892254
Alignment:
Q  189 caggggcgaatgcttgtacaacaaaggggtagctatggctaccc 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  38892297 caggggcgaatgcttgtacaacaaaggggtagctatggctaccc 38892254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 27099031 - 27098991
Alignment:
Q  192 gggcgaatgcttgtacaacaaaggggtagctatggctaccc 232  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  27099031 gggcgaatgcttgtacaacaaaggggtagctatggctaccc 27098991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 27179272 - 27179312
Alignment:
Q  192 gggcgaatgcttgtacaacaaaggggtagctatggctaccc 232  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  27179272 gggcgaatgcttgtacaacaaaggggtagctatggctaccc 27179312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 189 - 236
Target Start/End: Complemental strand, 31174619 - 31174572
Alignment:
Q  189 caggggcgaatgcttgtacaacaaaggggtagctatggctaccccaaa 236  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||    
T  31174619 caggggcgaatgcttgtatgacaaaggggtagctatggctaccccaaa 31174572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 236
Target Start/End: Complemental strand, 23333453 - 23333406
Alignment:
Q  189 caggggcgaatgcttgtacaacaaaggggtagctatggctaccccaaa 236  Q
    ||||||||||||||||||||  | ||||||||||||||| ||||||||    
T  23333453 caggggcgaatgcttgtacaggagaggggtagctatggccaccccaaa 23333406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 190 - 236
Target Start/End: Original strand, 18501935 - 18501981
Alignment:
Q  190 aggggcgaatgcttgtacaacaaaggggtagctatggctaccccaaa 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  18501935 aggggcgaatgcttgtacaacaaaggggtagctatggctaccccaaa 18501981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 23237663 - 23237619
Alignment:
Q  192 gggcgaatgcttgtacaacaaaggggtagctatggctaccccaaa 236  Q
    |||||||||||||||||| | ||||||||||||||||||||||||    
T  23237663 gggcgaatgcttgtacaagagaggggtagctatggctaccccaaa 23237619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 236
Target Start/End: Original strand, 27512854 - 27512901
Alignment:
Q  189 caggggcgaatgcttgtacaacaaaggggtagctatggctaccccaaa 236  Q
    ||||||| ||||||||||||| | ||||||||||||||||||||||||    
T  27512854 caggggccaatgcttgtacaagagaggggtagctatggctaccccaaa 27512901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 232
Target Start/End: Original strand, 4608056 - 4608099
Alignment:
Q  189 caggggcgaatgcttgtacaacaaaggggtagctatggctaccc 232  Q
    |||||||||||||||||| || | ||||||||||||||||||||    
T  4608056 caggggcgaatgcttgtataagagaggggtagctatggctaccc 4608099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 236
Target Start/End: Complemental strand, 18493942 - 18493895
Alignment:
Q  189 caggggcgaatgcttgtacaacaaaggggtagctatggctaccccaaa 236  Q
    |||||||||||||||||  || | ||||||||||||||||||||||||    
T  18493942 caggggcgaatgcttgttaaagagaggggtagctatggctaccccaaa 18493895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 236
Target Start/End: Complemental strand, 22376045 - 22375998
Alignment:
Q  189 caggggcgaatgcttgtacaacaaaggggtagctatggctaccccaaa 236  Q
    |||||||||||||||||  || | ||||||||||||||||||||||||    
T  22376045 caggggcgaatgcttgttaaagagaggggtagctatggctaccccaaa 22375998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 236
Target Start/End: Complemental strand, 39606446 - 39606399
Alignment:
Q  189 caggggcgaatgcttgtacaacaaaggggtagctatggctaccccaaa 236  Q
    ||||||||||||||||||||  | |||||||||||||||||| |||||    
T  39606446 caggggcgaatgcttgtacaggagaggggtagctatggctactccaaa 39606399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 187 - 236
Target Start/End: Original strand, 2096032 - 2096081
Alignment:
Q  187 ctcaggggcgaatgcttgtacaacaaaggggtagctatggctaccccaaa 236  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  2096032 ctcaggggcgaatgcttgtacaagagaggggtagctatggctaccccaaa 2096081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 42092437 - 42092397
Alignment:
Q  196 gaatgcttgtacaacaaaggggtagctatggctaccccaaa 236  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  42092437 gaatgcttgtacaacaaaggggtagctatggctaccccaaa 42092397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 189 - 236
Target Start/End: Original strand, 39570764 - 39570811
Alignment:
Q  189 caggggcgaatgcttgtacaacaaaggggtagctatggctaccccaaa 236  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||    
T  39570764 caggggcgaatgcttgtacaagagaggggtagctatggctaccccaaa 39570811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 6735844 - 6735886
Alignment:
Q  190 aggggcgaatgcttgtacaacaaaggggtagctatggctaccc 232  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  6735844 aggggcgaatgcttgtacaaccaaggggtagctatggctaccc 6735886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 236
Target Start/End: Complemental strand, 12947444 - 12947397
Alignment:
Q  189 caggggcgaatgcttgtacaacaaaggggtagctatggctaccccaaa 236  Q
    ||||||||||||||| ||||| | |||| |||||||||||||||||||    
T  12947444 caggggcgaatgcttatacaagagagggatagctatggctaccccaaa 12947397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 26632930 - 26632974
Alignment:
Q  192 gggcgaatgcttgtacaacaaaggggtagctatggctaccccaaa 236  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  26632930 gggcgaatgcttgtacaacaaaggggtagctatggctacctcaaa 26632974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 189 - 236
Target Start/End: Original strand, 44592518 - 44592565
Alignment:
Q  189 caggggcgaatgcttgtacaacaaaggggtagctatggctaccccaaa 236  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||    
T  44592518 caggggcgaatgcttgtacaagagaggggtagctatggctaccccaaa 44592565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 236
Target Start/End: Original strand, 27773485 - 27773532
Alignment:
Q  189 caggggcgaatgcttgtacaacaaaggggtagctatggctaccccaaa 236  Q
    |||||| |||||||| |||||||||||||||||||||||||| |||||    
T  27773485 caggggtgaatgcttctacaacaaaggggtagctatggctactccaaa 27773532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 232
Target Start/End: Original strand, 43022452 - 43022495
Alignment:
Q  189 caggggcgaatgcttgtacaacaaaggggtagctatggctaccc 232  Q
    |||||||||||| |||||||| | ||||||||||||||||||||    
T  43022452 caggggcgaatgtttgtacaagagaggggtagctatggctaccc 43022495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 236
Target Start/End: Original strand, 50099538 - 50099585
Alignment:
Q  189 caggggcgaatgcttgtacaacaaaggggtagctatggctaccccaaa 236  Q
    |||||||||||||||||  || | ||||||||||||||||||||||||    
T  50099538 caggggcgaatgcttgttaaagagaggggtagctatggctaccccaaa 50099585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 236
Target Start/End: Complemental strand, 36157100 - 36157055
Alignment:
Q  190 aggggcgaatgcttgtacaacaaaggggtagctatggctaccccaaa 236  Q
    |||||||||||||||||||| | |||| |||||||||||||||||||    
T  36157100 aggggcgaatgcttgtacaaaagaggg-tagctatggctaccccaaa 36157055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 236
Target Start/End: Complemental strand, 33538511 - 33538462
Alignment:
Q  187 ctcaggggcgaatgcttgtacaacaaaggggtagctatggctaccccaaa 236  Q
    |||||||||||| |||||||||| | ||||||||||||||||||||||||    
T  33538511 ctcaggggcgaaggcttgtacaagagaggggtagctatggctaccccaaa 33538462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 236
Target Start/End: Complemental strand, 22775410 - 22775363
Alignment:
Q  189 caggggcgaatgcttgtacaacaaaggggtagctatggctaccccaaa 236  Q
    |||||| |||||||||||||| | ||||||||||||||||||||||||    
T  22775410 caggggtgaatgcttgtacaagagaggggtagctatggctaccccaaa 22775363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 236
Target Start/End: Original strand, 37057456 - 37057503
Alignment:
Q  189 caggggcgaatgcttgtacaacaaaggggtagctatggctaccccaaa 236  Q
    ||||||||||||||||||||  | ||||||||||||||| ||||||||    
T  37057456 caggggcgaatgcttgtacaggagaggggtagctatggccaccccaaa 37057503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 37224332 - 37224371
Alignment:
Q  197 aatgcttgtacaacaaaggggtagctatggctaccccaaa 236  Q
    ||||||||||||| | ||||||||||||||||||||||||    
T  37224332 aatgcttgtacaagagaggggtagctatggctaccccaaa 37224371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 236
Target Start/End: Complemental strand, 7590643 - 7590597
Alignment:
Q  190 aggggcgaatgcttgtacaacaaaggggtagctatggctaccccaaa 236  Q
    |||||||||||||||| ||| | ||||||||||||| ||||||||||    
T  7590643 aggggcgaatgcttgtccaagagaggggtagctatgactaccccaaa 7590597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University