View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14007_low_6 (Length: 351)

Name: NF14007_low_6
Description: NF14007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14007_low_6
NF14007_low_6
[»] chr6 (8 HSPs)
chr6 (15-336)||(10543131-10543452)
chr6 (11-99)||(6389707-6389795)
chr6 (67-101)||(22965912-22965946)
chr6 (67-101)||(23822447-23822481)
chr6 (66-99)||(12235526-12235559)
chr6 (66-99)||(34446584-34446617)
chr6 (31-99)||(6299496-6299564)
chr6 (31-99)||(6306306-6306374)
[»] chr4 (5 HSPs)
chr4 (9-96)||(7012029-7012115)
chr4 (15-99)||(24343475-24343559)
chr4 (106-145)||(3144584-3144623)
chr4 (66-100)||(31243554-31243588)
chr4 (66-98)||(20743286-20743318)
[»] chr5 (3 HSPs)
chr5 (15-99)||(26205767-26205851)
chr5 (15-98)||(19293431-19293514)
chr5 (9-99)||(21137651-21137741)
[»] chr7 (3 HSPs)
chr7 (9-82)||(19206012-19206085)
chr7 (9-99)||(4017801-4017891)
chr7 (66-98)||(23930238-23930270)
[»] chr1 (1 HSPs)
chr1 (15-140)||(398735-398856)
[»] chr3 (4 HSPs)
chr3 (66-113)||(20691338-20691385)
chr3 (16-98)||(25652039-25652121)
chr3 (66-99)||(1830362-1830395)
chr3 (15-99)||(24205048-24205132)
[»] chr2 (3 HSPs)
chr2 (22-99)||(24011012-24011088)
chr2 (23-99)||(10535766-10535842)
chr2 (67-99)||(11308011-11308043)
[»] scaffold0314 (1 HSPs)
scaffold0314 (51-91)||(8952-8992)
[»] chr8 (1 HSPs)
chr8 (66-142)||(34897104-34897180)


Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 15 - 336
Target Start/End: Original strand, 10543131 - 10543452
Alignment:
Q  15 gacaccagacacgacacggacaccaacacgccgacttcgataaaattttctgaaaatgacataattcagcgtaatcataggtgtcaatgtcagacacacc 114  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||| ||||||  |||||||||||||    
T  10543131 gacaccagacacgacacgaacaccaacacgccaacttcgataaaattttctaaaaatgacataattcaacgtaatcatgggtgtcggtgtcagacacacc 10543230  T
Q  115 taatctcagaagtgtccgtgcttcatagataacgactattatnnnnnnnngggtttcaattcaagccattcttgacttgaatggttctcataggcttgtc 214  Q
    |||||||||||||||  |||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||     
T  10543231 taatctcagaagtgtttgtgcttcatagataacgactattataaaaaaaagggtttcaattcaagccattcttgacttgaatggttctcataggcttgtt 10543330  T
Q  215 aaagtgaccaggaggatgcagttttttaagaacaataacactaagaacaccatttcgacaagaagcggaaatagaacacataatagcattgtgaggaaga 314  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  10543331 aaagtgatcaggaggatgcagttttttaagaacaataacactaagaacaccatttcgacaagaagcggaaatagaagacatactagcattgtgaggaaga 10543430  T
Q  315 acaaagctgcgtatgaactttc 336  Q
    ||||||||||||||||||||||    
T  10543431 acaaagctgcgtatgaactttc 10543452  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 6389707 - 6389795
Alignment:
Q  11 cacagacaccagacacgacacggacaccaacacgccgacttcgataaaattttctgaaaatgacataattcagcgtaatcataggtgtc 99  Q
    |||||||||| ||||||||||||||||  ||||||||||   ||||| | |||  |||||||| |||||| || |||||||||||||||    
T  6389707 cacagacaccggacacgacacggacactcacacgccgacacggataataatttgagaaaatgatataatttagtgtaatcataggtgtc 6389795  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 101
Target Start/End: Complemental strand, 22965946 - 22965912
Alignment:
Q  67 aaaatgacataattcagcgtaatcataggtgtcaa 101  Q
    ||||||| |||||||||||||||||||||||||||    
T  22965946 aaaatgatataattcagcgtaatcataggtgtcaa 22965912  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 101
Target Start/End: Original strand, 23822447 - 23822481
Alignment:
Q  67 aaaatgacataattcagcgtaatcataggtgtcaa 101  Q
    ||||||| |||||||||||||||||||||||||||    
T  23822447 aaaatgatataattcagcgtaatcataggtgtcaa 23822481  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 99
Target Start/End: Complemental strand, 12235559 - 12235526
Alignment:
Q  66 gaaaatgacataattcagcgtaatcataggtgtc 99  Q
    |||||||||||||||||| |||||||||||||||    
T  12235559 gaaaatgacataattcagtgtaatcataggtgtc 12235526  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 99
Target Start/End: Original strand, 34446584 - 34446617
Alignment:
Q  66 gaaaatgacataattcagcgtaatcataggtgtc 99  Q
    |||||||||||||||||| |||||||||||||||    
T  34446584 gaaaatgacataattcagtgtaatcataggtgtc 34446617  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 6299496 - 6299564
Alignment:
Q  31 cggacaccaacacgccgacttcgataaaattttctgaaaatgacataattcagcgtaatcataggtgtc 99  Q
    ||||||||||||||||||| | ||||| | |||  |||||||| ||||||||  ||||| |||||||||    
T  6299496 cggacaccaacacgccgacatggataataatttgagaaaatgatataattcaatgtaatgataggtgtc 6299564  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 6306306 - 6306374
Alignment:
Q  31 cggacaccaacacgccgacttcgataaaattttctgaaaatgacataattcagcgtaatcataggtgtc 99  Q
    ||||||||||||||||||| | ||||| | |||  |||||||| ||||||||  ||||| |||||||||    
T  6306306 cggacaccaacacgccgacatggataataatttgagaaaatgatataattcaatgtaatgataggtgtc 6306374  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 96
Target Start/End: Original strand, 7012029 - 7012115
Alignment:
Q  9 agcacagacaccagacacgacacggacaccaacacgccgacttcgataaaattttctgaaaatgacataattcagcgtaatcataggt 96  Q
    ||||||||||| ||||| |||||||||||| ||||||||||  |||||| | |||  |||||||||||||||||| || |||||||||    
T  7012029 agcacagacac-agacaggacacggacaccgacacgccgacaccgataataatttgagaaaatgacataattcagtgtgatcataggt 7012115  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 24343475 - 24343559
Alignment:
Q  15 gacaccagacacgacacggacaccaacacgccgacttcgataaaattttctgaaaatgacataattcagcgtaatcataggtgtc 99  Q
    |||||| |||||||||||||| || ||||||||||   ||||| | |||  |||||| ||||||||||| ||||| |||||||||    
T  24343475 gacaccggacacgacacggacgccgacacgccgacacggataataatttgagaaaattacataattcagtgtaattataggtgtc 24343559  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 106 - 145
Target Start/End: Complemental strand, 3144623 - 3144584
Alignment:
Q  106 agacacacctaatctcagaagtgtccgtgcttcatagata 145  Q
    ||||||||||||||  ||||||||||||||||||||||||    
T  3144623 agacacacctaatccgagaagtgtccgtgcttcatagata 3144584  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 100
Target Start/End: Complemental strand, 31243588 - 31243554
Alignment:
Q  66 gaaaatgacataattcagcgtaatcataggtgtca 100  Q
    |||||||||||||||||| ||||||||||||||||    
T  31243588 gaaaatgacataattcagtgtaatcataggtgtca 31243554  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 98
Target Start/End: Complemental strand, 20743318 - 20743286
Alignment:
Q  66 gaaaatgacataattcagcgtaatcataggtgt 98  Q
    |||||||||||||||||| ||||||||||||||    
T  20743318 gaaaatgacataattcagtgtaatcataggtgt 20743286  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 26205851 - 26205767
Alignment:
Q  15 gacaccagacacgacacggacaccaacacgccgacttcgataaaattttctgaaaatgacataattcagcgtaatcataggtgtc 99  Q
    |||||| |||| |||| ||||||  ||||| |||   ||||||||||||  |||||||||||||||||| |||||||||||||||    
T  26205851 gacaccggacatgacatggacactgacacgtcgataccgataaaattttgagaaaatgacataattcagtgtaatcataggtgtc 26205767  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 19293514 - 19293431
Alignment:
Q  15 gacaccagacacgacacggacaccaacacgccgacttcgataaaattttctgaaaatgacataattcagcgtaatcataggtgt 98  Q
    ||||||||||||||||| ||||||||||||| |||  | |||| | |||  |||||| |||||||| || ||||||||| ||||    
T  19293514 gacaccagacacgacacagacaccaacacgctgacaccaataataatttaagaaaataacataattaagtgtaatcatatgtgt 19293431  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 21137651 - 21137741
Alignment:
Q  9 agcacagacaccagacacgacacggacaccaacacgccgacttcgataaaattttctgaaaatgacataattcagcgtaatcataggtgtc 99  Q
    ||||| |||||| ||||| ||||||||||  |||||||||| ||| ||| | | |  ||||||||| |||||||| | |||||||||||||    
T  21137651 agcacggacaccggacacaacacggacactgacacgccgacatcggtaataatctgagaaaatgacgtaattcagtgaaatcataggtgtc 21137741  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 19206012 - 19206085
Alignment:
Q  9 agcacagacaccagacacgacacggacaccaacacgccgacttcgataaaattttctgaaaatgacataattca 82  Q
    ||||| || ||||||||||||||||||||||||||||||||  || ||| | |||  |||||| ||||||||||    
T  19206012 agcacggataccagacacgacacggacaccaacacgccgacaccgctaataatttgagaaaatcacataattca 19206085  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 4017891 - 4017801
Alignment:
Q  9 agcacagacaccagacacgacacggacaccaacacgccgacttcgataaaattttctgaaaatgacataattcagcgtaatcataggtgtc 99  Q
    |||||||||||  ||||||||||||||||| ||||||||||   ||||| | |||  ||||| || |||||| || ||||||||| |||||    
T  4017891 agcacagacactggacacgacacggacaccgacacgccgacacggataataatttgagaaaacgatataatttagtgtaatcataagtgtc 4017801  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 98
Target Start/End: Original strand, 23930238 - 23930270
Alignment:
Q  66 gaaaatgacataattcagcgtaatcataggtgt 98  Q
    |||||||||||||||||| ||||||||||||||    
T  23930238 gaaaatgacataattcagtgtaatcataggtgt 23930270  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 140
Target Start/End: Complemental strand, 398856 - 398735
Alignment:
Q  15 gacaccagacacgacacggacaccaacacgccgacttcgataaaattttctgaaaatgacataattcagcgtaatcataggtgtcaatgtcagacacacc 114  Q
    |||||| ||||||||||||||||  ||||||||||  || ||| | |||   ||||| ||||||||||| ||||| |||||||||       ||||| ||    
T  398856 gacaccggacacgacacggacactgacacgccgacaccgctaataatttgaaaaaatcacataattcagtgtaattataggtgtc----cgggacacgcc 398761  T
Q  115 taatctcagaagtgtccgtgcttcat 140  Q
    |||||| |||||||||||||||||||    
T  398760 taatctaagaagtgtccgtgcttcat 398735  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 66 - 113
Target Start/End: Original strand, 20691338 - 20691385
Alignment:
Q  66 gaaaatgacataattcagcgtaatcataggtgtcaatgtcagacacac 113  Q
    |||||||||||||||||| ||||||||| |||||  ||||||||||||    
T  20691338 gaaaatgacataattcagtgtaatcatatgtgtcggtgtcagacacac 20691385  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 25652121 - 25652039
Alignment:
Q  16 acaccagacacgacacggacaccaacacgccgacttcgataaaattttctgaaaatgacataattcagcgtaatcataggtgt 98  Q
    |||||||||||||||||||||| |||||||| ||   ||||| | |||  |||||||| ||||||||| ||| | ||||||||    
T  25652121 acaccagacacgacacggacactaacacgccaacacggataataatttgagaaaatgatataattcagtgtagttataggtgt 25652039  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 99
Target Start/End: Original strand, 1830362 - 1830395
Alignment:
Q  66 gaaaatgacataattcagcgtaatcataggtgtc 99  Q
    |||||||||||||||||| |||||||||||||||    
T  1830362 gaaaatgacataattcagtgtaatcataggtgtc 1830395  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 24205132 - 24205048
Alignment:
Q  15 gacaccagacacgacacggacaccaacacgccgacttcgataaaattttctgaaaatgacataattcagcgtaatcataggtgtc 99  Q
    |||||| ||||||||||||||||  ||||||||||   ||||| | |||  |||||||||||||| ||| ||||| ||| |||||    
T  24205132 gacaccggacacgacacggacactgacacgccgacacggataataatttgagaaaatgacataatacagtgtaattataagtgtc 24205048  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 24011012 - 24011088
Alignment:
Q  22 gacacgacacggacaccaacacgccgacttcgataaaattttctgaaaatgacataattcagcgtaatcataggtgtc 99  Q
    ||||||||||  ||||||| |||||||| | ||||| | |||  ||||||||||||||| || |||||||||||||||    
T  24011012 gacacgacacaaacaccaa-acgccgacattgataataatttgagaaaatgacataatttagtgtaatcataggtgtc 24011088  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 10535842 - 10535766
Alignment:
Q  23 acacgacacggacaccaacacgccgacttcgataaaattttctgaaaatgacataattcagcgtaatcataggtgtc 99  Q
    ||||||||| || || || ||||||||  |||||| | |||  |||||||||||||||||| ||||||||| |||||    
T  10535842 acacgacacagatactaatacgccgacaccgataataatttgagaaaatgacataattcagtgtaatcataagtgtc 10535766  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 11308043 - 11308011
Alignment:
Q  67 aaaatgacataattcagcgtaatcataggtgtc 99  Q
    ||||||||||||||||| |||||||||||||||    
T  11308043 aaaatgacataattcagtgtaatcataggtgtc 11308011  T

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Target: scaffold0314 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 91
Target Start/End: Original strand, 8952 - 8992
Alignment:
Q  51 tcgataaaattttctgaaaatgacataattcagcgtaatca 91  Q
    |||||||||||||  ||||||||||||||||| ||||||||    
T  8952 tcgataaaattttgagaaaatgacataattcaacgtaatca 8992  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 142
Target Start/End: Original strand, 34897104 - 34897180
Alignment:
Q  66 gaaaatgacataattcagcgtaatcataggtgtcaatgtcagacacacctaatctcagaagtgtccgtgcttcatag 142  Q
    |||||| ||||||||||| ||||| ||| ||||| ||||| ||||||  ||||   || ||||||||||||||||||    
T  34897104 gaaaatcacataattcagtgtaattatatgtgtcgatgtcggacacatgtaattcgaggagtgtccgtgcttcatag 34897180  T

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