View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14007_low_8 (Length: 292)
Name: NF14007_low_8
Description: NF14007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14007_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 10379189 - 10378963
Alignment:
| Q |
19 |
cagagaacatggaccttcctttgagaatgtcagcatctatactatgccattgacacaacagagatcaagtgcatgtatcatgttaacatgataatctaaa |
118 |
Q |
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| T |
10379189 |
cagagaacatggaccttcctttgagaatgtcagcatctatactatgccattgacacaacagagatcaagtgcatgtatcatgttaacatgataatctaaa |
10379090 |
T |
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| Q |
119 |
tcagaaaagggttgtatgagagcaccaaacacaaacaaccatagattttggcatctagtatcctttatttgaaggattctctcggtagtaaggaaggaac |
218 |
Q |
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| T |
10379089 |
tcagaaaagggttgtatgagagcaccaaacacaaacaaccatagattttggcatctagtatcctttatttgaaggattctctcggtagtaaggaaggaac |
10378990 |
T |
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| Q |
219 |
tccaattcttgcaagcaagcctaacat |
245 |
Q |
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| T |
10378989 |
tccaattcttgcaagcaagcctaacat |
10378963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 183 - 245
Target Start/End: Complemental strand, 10367500 - 10367438
Alignment:
| Q |
183 |
ttatttgaaggattctctcggtagtaaggaaggaactccaattcttgcaagcaagcctaacat |
245 |
Q |
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| T |
10367500 |
ttatttgaaggattctctcagtggtaaggaaggaactccaattcttgcaaacaagcctaacat |
10367438 |
T |
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