View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14008_high_1 (Length: 549)

Name: NF14008_high_1
Description: NF14008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14008_high_1
NF14008_high_1
[»] chr8 (4 HSPs)
chr8 (367-541)||(32639135-32639309)
chr8 (63-274)||(32637972-32638186)
chr8 (267-372)||(32638978-32639083)
chr8 (423-480)||(11567810-11567867)
[»] chr1 (4 HSPs)
chr1 (370-473)||(5086028-5086131)
chr1 (418-488)||(29086792-29086862)
chr1 (301-331)||(31135649-31135679)
chr1 (419-488)||(49191663-49191732)
[»] chr4 (3 HSPs)
chr4 (389-473)||(42784773-42784857)
chr4 (372-457)||(14013842-14013927)
chr4 (389-489)||(49984439-49984538)
[»] chr6 (1 HSPs)
chr6 (370-489)||(34428059-34428178)
[»] chr3 (1 HSPs)
chr3 (405-488)||(53798248-53798330)
[»] chr2 (4 HSPs)
chr2 (391-481)||(33643546-33643636)
chr2 (419-478)||(33719047-33719106)
chr2 (300-337)||(32710266-32710303)
chr2 (300-349)||(33459226-33459275)
[»] chr5 (2 HSPs)
chr5 (370-459)||(32810900-32810989)
chr5 (299-331)||(35138552-35138584)


Alignment Details
Target: chr8 (Bit Score: 175; Significance: 6e-94; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 367 - 541
Target Start/End: Original strand, 32639135 - 32639309
Alignment:
Q  367 aaaagatattttgatagagtggctaaattgatggaagttctttagtttaacggactaatttactatttcgtaaatttgagaaactaaattgctcgaccat 466  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32639135 aaaagatattttgatagagtggctaaattgatggaagttctttagtttaacggactaatttactatttcgtaaatttgagaaactaaattgctcgaccat 32639234  T
Q  467 tacaattctgaggaccgaaatgccgaacattctctccttcaaaatcactgtcatctaccagctgatccctatgct 541  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32639235 tacaattctgaggaccgaaatgccgaacattctctccttcaaaatcactgtcatctaccagctgatccctatgct 32639309  T

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Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 63 - 274
Target Start/End: Original strand, 32637972 - 32638186
Alignment:
Q  63 aaaatcatttcatgctgcaacagcagcaatgcgtgtcgcagaaactgccacaannnnnnn--catcgattgcggtatgtattctcttcaagttgacaaaa 160  Q
    ||||| |||||||||||||||||| | ||||||||| |||||||||| ||| |         ||| ||||   |||||||||||||||||||||||||||    
T  32637972 aaaattatttcatgctgcaacagcggtaatgcgtgttgcagaaactgtcacgataattttgtcattgattcgagtatgtattctcttcaagttgacaaaa 32638071  T
Q  161 gataaaa-aagaagtggataaatatcctatgaaaattcaaagtagaagatcaaatcttgaaacaaaagaaacaaaggcatatccgatccctccaaatctg 259  Q
    ||||||| || ||||||||||| |||||||||| ||||||||| |||||||||| ||  |||||||||  ||||||| |||||  |||||||||||||||    
T  32638072 gataaaacaaaaagtggataaaaatcctatgaagattcaaagtggaagatcaaagctcaaaacaaaaggcacaaagggatatcaaatccctccaaatctg 32638171  T
Q  260 aaagtcaggtttcag 274  Q
    |||||||||||||||    
T  32638172 aaagtcaggtttcag 32638186  T

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Target: chr8; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 267 - 372
Target Start/End: Original strand, 32638978 - 32639083
Alignment:
Q  267 ggtttcagttagtacacttttcttaaatttatcgaaatagcaatttagtcctttaaattgaacaacatcaattaatctagtccatttgtcacgatgcagc 366  Q
    ||||||||||  ||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  32638978 ggtttcagttgatacacttttcttaaatttatgaaaatagcaatttagtcctttaaattgatcaacatcaatcaatctagtccatttgtcacgatgcagc 32639077  T
Q  367 aaaaga 372  Q
    ||||||    
T  32639078 aaaaga 32639083  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 480
Target Start/End: Original strand, 11567810 - 11567867
Alignment:
Q  423 aatttactatttcgtaaatttgagaaactaaattgctcgaccattacaattctgagga 480  Q
    ||||| ||||||||||||||||||  |||||||||| | ||||||||| ||| |||||    
T  11567810 aatttgctatttcgtaaatttgagggactaaattgcccaaccattacatttccgagga 11567867  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 370 - 473
Target Start/End: Original strand, 5086028 - 5086131
Alignment:
Q  370 agatattttgatagagtggctaaattgatggaagttctttagtttaacggactaatttactatttcgtaaatttgagaaactaaattgctcgaccattac 469  Q
    |||||||||||| || |  |||||||||| ||  ||||||| ||||| |||||||||| |||||| |||||||||||  |||||||| || ||| |||||    
T  5086028 agatattttgattgaataactaaattgattgatattctttaatttaaaggactaatttgctattttgtaaatttgagggactaaatttcttgacaattac 5086127  T
Q  470 aatt 473  Q
    ||||    
T  5086128 aatt 5086131  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 418 - 488
Target Start/End: Original strand, 29086792 - 29086862
Alignment:
Q  418 ggactaatttactatttcgtaaatttgagaaactaaattgctcgaccattacaattctgaggaccgaaatg 488  Q
    |||||| ||| |||||| |||||||  ||  |||||||||||||| |||||||||| ||||||||| ||||    
T  29086792 ggactagttttctattttgtaaattgaagggactaaattgctcgatcattacaattttgaggaccggaatg 29086862  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 331
Target Start/End: Complemental strand, 31135679 - 31135649
Alignment:
Q  301 aaatagcaatttagtcctttaaattgaacaa 331  Q
    |||||||||||||||||||||||||||||||    
T  31135679 aaatagcaatttagtcctttaaattgaacaa 31135649  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 488
Target Start/End: Complemental strand, 49191732 - 49191663
Alignment:
Q  419 gactaatttactatttcgtaaatttgagaaactaaattgctcgaccattacaattctgaggaccgaaatg 488  Q
    ||||| ||| ||||||||||||||| ||  ||| ||||||||| | ||||||||| |||| |||||||||    
T  49191732 gactattttcctatttcgtaaattttagggactgaattgctcggctattacaattttgagaaccgaaatg 49191663  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 473
Target Start/End: Complemental strand, 42784857 - 42784773
Alignment:
Q  389 ctaaattgatggaagttctttagtttaacggactaatttactatttcgtaaatttgagaaactaaattgctcgaccattacaatt 473  Q
    ||||||| || ||| |||||||  || | |||||||||| ||||||||||||||| || |||||||||| |||||||| ||||||    
T  42784857 ctaaattaattgaatttctttaacttgagggactaatttgctatttcgtaaatttcaggaactaaattgatcgaccatcacaatt 42784773  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 372 - 457
Target Start/End: Complemental strand, 14013927 - 14013842
Alignment:
Q  372 atattttgatagagtggctaaattgatggaagttctttagtttaacggactaatttactatttcgtaaatttgagaaactaaattg 457  Q
    |||||||||||||| | |||||||||| |  |||||||| ||||| ||| || ||| ||||||| ||||||||||  |||||||||    
T  14013927 atattttgatagagggactaaattgattggtgttctttaatttaagggattattttgctatttcataaatttgagggactaaattg 14013842  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 389 - 489
Target Start/End: Original strand, 49984439 - 49984538
Alignment:
Q  389 ctaaattgatggaagttctttagtttaacggactaatttactatttcgtaaatttgagaaactaaattgctcgaccattacaattctgaggaccgaaatg 488  Q
    |||||||||| || |||||||| || || |||| |||||||  ||||||||||||||||  || ||||  |||||||||  |||| ||||||| ||||||    
T  49984439 ctaaattgattgatgttctttaattaaa-ggaccaatttacagtttcgtaaatttgagactctgaattagtcgaccattctaattttgaggactgaaatg 49984537  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 370 - 489
Target Start/End: Complemental strand, 34428178 - 34428059
Alignment:
Q  370 agatattttgatagagtggctaaattgatggaagttctttagtttaacggactaatttactatttcgtaaatttgagaaactaaattgctcgaccattac 469  Q
    |||||||||||| ||| | |||||||||| || | |||||| ||||| ||| |||||| |||| || ||||||||||  | |||||||  ||||| | ||    
T  34428178 agatattttgatggagggactaaattgattgaggctctttaatttaaaggattaatttgctatatcataaatttgagggattaaattgaccgaccttcac 34428079  T
Q  470 aattctgaggaccgaaatgc 489  Q
    |||| |||||||| ||||||    
T  34428078 aattttgaggaccaaaatgc 34428059  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 405 - 488
Target Start/End: Complemental strand, 53798330 - 53798248
Alignment:
Q  405 tctttagtttaacggactaatttactatttcgtaaatttgagaaactaaattgctcgaccattacaattctgaggaccgaaatg 488  Q
    |||||| ||||| |||||||||| |||||||||||||| | || |||||||||  ||||||||||||||  ||||| |||||||    
T  53798330 tctttaatttaaaggactaatttcctatttcgtaaattag-gagactaaattgaccgaccattacaatttcgaggatcgaaatg 53798248  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 481
Target Start/End: Complemental strand, 33643636 - 33643546
Alignment:
Q  391 aaattgatggaagttctttagtttaacggactaatttactatttcgtaaatttgagaaactaaattgctcgaccattacaattctgaggac 481  Q
    |||||||| || |||||||| ||| | |||||| ||| |||||||||||| |||||  | |||||||||||| | |||||||| |||||||    
T  33643636 aaattgattgacgttctttaatttgagggactactttgctatttcgtaaacttgagcgagtaaattgctcgagccttacaattttgaggac 33643546  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 478
Target Start/End: Original strand, 33719047 - 33719106
Alignment:
Q  419 gactaatttactatttcgtaaatttgagaaactaaattgctcgaccattacaattctgag 478  Q
    ||||| ||| |||||||||| |||||||  |||||||||||||||| |||||||| ||||    
T  33719047 gactagtttgctatttcgtatatttgagtgactaaattgctcgacccttacaattttgag 33719106  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 337
Target Start/End: Original strand, 32710266 - 32710303
Alignment:
Q  300 gaaatagcaatttagtcctttaaattgaacaacatcaa 337  Q
    ||||||||||||||||||||||||||||| || |||||    
T  32710266 gaaatagcaatttagtcctttaaattgaaaaatatcaa 32710303  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 349
Target Start/End: Original strand, 33459226 - 33459275
Alignment:
Q  300 gaaatagcaatttagtcctttaaattgaacaacatcaattaatctagtcc 349  Q
    |||||||||||| ||||| |||||||||| || |||||||||| ||||||    
T  33459226 gaaatagcaattcagtcccttaaattgaaaaatatcaattaatttagtcc 33459275  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 459
Target Start/End: Complemental strand, 32810989 - 32810900
Alignment:
Q  370 agatattttgatagagtggctaaattgatggaagttctttagtttaacggactaatttactatttcgtaaatttgagaaactaaattgct 459  Q
    |||||||||||| |||   |||||||||| || |||||||  ||| |  | ||||||| ||||||||||||||||||  |||||||||||    
T  32810989 agatattttgattgaggaactaaattgattgacgttcttttatttcagagcctaatttgctatttcgtaaatttgagggactaaattgct 32810900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 299 - 331
Target Start/End: Complemental strand, 35138584 - 35138552
Alignment:
Q  299 cgaaatagcaatttagtcctttaaattgaacaa 331  Q
    ||||||||||||||||||| |||||||||||||    
T  35138584 cgaaatagcaatttagtcccttaaattgaacaa 35138552  T

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