View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14008_high_2 (Length: 517)
Name: NF14008_high_2
Description: NF14008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14008_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 19 - 493
Target Start/End: Original strand, 30852898 - 30853376
Alignment:
| Q |
19 |
atgttcgccacttcttgt---gctttcaactttttagctattgcttccaattggatgcttagaagttttttgcttgatcgtaacacatcttgtgtttcca |
115 |
Q |
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| T |
30852898 |
atgttcgccacttcttgtactgcttccaactttttagctattgcttccaattggatgcttagaagtttgttgcttgatcgtaacacatcttgtgtttcca |
30852997 |
T |
|
| Q |
116 |
aacttagcactccttgcttcttttgaacagacatttcctcgattttaaggacatgttatcgatcatcaatcagatttcttctggtgtttcattcttcata |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30852998 |
aacttagcactccttgcttcttttgaacagacatttcctcgattttaaggacatgttattgatcatcaatcagatttcttctggtgtttcattcttcata |
30853097 |
T |
|
| Q |
216 |
gtacctcctgctgatgcgtctaagagcattcaagtttgtggcttcaaaccattggtt-aaattaaggtaatttcatctcaagaaatttatggcatgaatg |
314 |
Q |
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| T |
30853098 |
gtacctcctgctgatgtgtctaagagcattcaagtttgtgacttcaaaccattggttaaaattaaggtaatttcatctcaagaaatttgtggcatgaatg |
30853197 |
T |
|
| Q |
315 |
ttgcttgagtagaaacttaaatctcttccatgaaatgaaagaagttgagttggactttacgnnnnnnnaattttgagaaaagaccacccataaatttaga |
414 |
Q |
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| T |
30853198 |
ttgcttgagtagaaacttaactctctcccatgaaatgaaagaagttgagttggactatacgtttttttaattttgagaaaagaccgcccataaatttaga |
30853297 |
T |
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| Q |
415 |
ataatcttatg-tgacaacatgagtttccatgactcgtcttttgtgagtgagtcaagaaaatacaatatatcttcatatc |
493 |
Q |
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| T |
30853298 |
ataatcttatgttgacaacatgagtttccatgactcgtcttttgtgagtgagtcaagaaaatacaatata-cttcatatc |
30853376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 421 - 480
Target Start/End: Complemental strand, 15077187 - 15077128
Alignment:
| Q |
421 |
ttatgtgacaacatgagtttccatgactcgtcttttgtgagtgagtcaagaaaatacaat |
480 |
Q |
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|||| ||||||||||||||||||| ||| ||||||||||||||||||||||||| |||| |
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| T |
15077187 |
ttatatgacaacatgagtttccataacttatcttttgtgagtgagtcaagaaaatgcaat |
15077128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 375
Target Start/End: Complemental strand, 15077346 - 15077248
Alignment:
| Q |
276 |
ttaaggtaatttcatctcaagaaatttatggcatgaatgttgcttgagtagaaacttaaatctcttccatgaaatgaaagaagttgagttggactttacg |
375 |
Q |
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| T |
15077346 |
ttaaagtaatttcatctcagaaaatttgtgccctgaacattgcc-gagtagaaactcaaatctctcccaagaaatggaagaagttgaggaggactttacg |
15077248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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