View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14008_high_8 (Length: 233)
Name: NF14008_high_8
Description: NF14008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14008_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 214
Target Start/End: Original strand, 51146391 - 51146590
Alignment:
| Q |
15 |
atgaagaggtcagagcaaaatgatgcaaatgacgaaaacaagtcaatcagtatagtgcattctggaagacaatcgagtcagagatctttttccttaagat |
114 |
Q |
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| T |
51146391 |
atgaagaggtcagagcaaaatgatgcaaatgacaaaaacaagccaaacagtatagtgcattctggaagacaatcgagtcagagatctttttccttaagat |
51146490 |
T |
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| Q |
115 |
caataagccaagggtcagctggaaacagcggtcgtcactctttctcagcatcttatgttgcacccacaacagatggattcttagaaactgaagatggggg |
214 |
Q |
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| T |
51146491 |
caataagccaagggtcagctggaaacagcggtcgtcactctttctcagcatcttatgttgcacccacaacagatggattcttagaaactgaagatggggg |
51146590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 15 - 204
Target Start/End: Original strand, 51157530 - 51157719
Alignment:
| Q |
15 |
atgaagaggtcagagcaaaatgatgcaaatgacgaaaacaagtcaatcagtatagtgcattctggaagacaatcgagtcagagatctttttccttaagat |
114 |
Q |
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| T |
51157530 |
atgaagggttcagaacagaatgatgcaaatgataaaaacaagtcaaacagtatagtgcattctggaagacaatcgagtcagagatctttttccttaagat |
51157629 |
T |
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| Q |
115 |
caataagccaagggtcagctggaaacagcggtcgtcactctttctcagcatcttatgttgcacccacaacagatggattcttagaaactg |
204 |
Q |
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| T |
51157630 |
ctataagccaagggtcatctggaaacagcggtcgtcactctttctcagcatcatatgttgcacccgcaacagatggcttcttagaaactg |
51157719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 15 - 211
Target Start/End: Complemental strand, 29936640 - 29936444
Alignment:
| Q |
15 |
atgaagaggtcagagcaaaatgatgcaaatgacgaaaacaagtcaatcagtatagtgcattctggaagacaatcgagtcagagatctttttccttaagat |
114 |
Q |
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|||||| ||||||| ||||||| ||| |||||| ||| || |||| ||||||| ||| |||| || || ||| ||| | | |||||| |||| ||||| |
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| T |
29936640 |
atgaaggggtcagaacaaaatgttgccaatgactcaaataaatcaaacagtataatgctatctgaaaaacgatcaagtgaaatatctttatcctcaagat |
29936541 |
T |
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| Q |
115 |
caataagccaagggtcagctggaaacagcggtcgtcactctttctcagcatcttatgttgcacccacaacagatggattcttagaaactgaagatgg |
211 |
Q |
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| T |
29936540 |
tcataaggcaagtgtcatctggaaacagtggtcgtcactctttttcagcatcatgtggtgcacccacaacagatggcttcttagagactgcagatgg |
29936444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 166
Target Start/End: Original strand, 51200342 - 51200472
Alignment:
| Q |
42 |
aatgacgaaaacaagtcaatcagtatagtgcattctggaagacaatcgagtcagagatctttttccttaagatcaataagccaagggtcagctgga---- |
137 |
Q |
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|||||| |||||||||||| ||||||||||| |||| ||||| ||||||||| |||||| | |||| ||| || ||||||||| |||| ||||| |
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| T |
51200342 |
aatgacaaaaacaagtcaaacagtatagtgctatctgaaagacgatcgagtcaaagatctctctcctcaaggtctttaagccaagtgtcatctggaggtg |
51200441 |
T |
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| Q |
138 |
--aacagcggtcgtcactctttctcagcatc |
166 |
Q |
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| T |
51200442 |
ggaacagcggtcgtcactcattctcagcatc |
51200472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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