View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14008_low_3 (Length: 480)
Name: NF14008_low_3
Description: NF14008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14008_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 10 - 461
Target Start/End: Complemental strand, 21284641 - 21284190
Alignment:
| Q |
10 |
agatggacatcatcatcatggccacaatcacatggcaacatcattagctctcaaaagtaaaaaacaagaatttgaactcaaccacacagtgacaacaatg |
109 |
Q |
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| T |
21284641 |
agatgcacatcatcatcatggccacaatcacatggcaacatcattagctctcaaaagtaaaaaacaagaatttgaactcaaccacacagtgacaacaatg |
21284542 |
T |
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| Q |
110 |
tgcactcacaaggaatagtactttgtcacctactcataccaaaaccaaatcacaagtgacactgtactactaagtgtttgatgtacagttgatttggtta |
209 |
Q |
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| T |
21284541 |
tgcactcacaaggaatagtactttgtcacctactcataccaaaaccaaatcacaagtgacactgtactactaagtgtttgatgtacagttgatttggtta |
21284442 |
T |
|
| Q |
210 |
cagctgagtttaaaagtaatgtttctttaaaaagaatttgaggtaaagtgacttttgatgatttttactcttttaacttagaatgtaaattagtgtagat |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21284441 |
cagctgagtttaaaagtaatgtttctttaaaaagaatttgaggtaaagtgacttttgatgatttttactcttttaacttagaatgtaaattagtgtagat |
21284342 |
T |
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| Q |
310 |
ttttcaaatgaagccaaaagttattcattatcacattacaacatctagtcaaactaaggtttgtctgaggaagaccaaacacataggttttcactatgat |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21284341 |
ttttcaaatgaagccaaaagttattcattatcacattacaacatctagtcaaactaaggtttgtctgaggaagaccaaacacataggttttcactatgat |
21284242 |
T |
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| Q |
410 |
taagtttaatgggaataaacaaaatcaattcttctcaactatggaaccaaac |
461 |
Q |
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| T |
21284241 |
taagtttaatgggaataaacaaaatcaattcttctcaactatggaaccaaac |
21284190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 38064295 - 38064249
Alignment:
| Q |
30 |
gccacaatcacatggcaacatcattagctctcaaaagtaaaaaacaa |
76 |
Q |
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|||||||||||||| |||||| ||||||||||||||| ||||||||| |
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| T |
38064295 |
gccacaatcacatgtcaacattattagctctcaaaagcaaaaaacaa |
38064249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 440
Target Start/End: Original strand, 30598559 - 30598603
Alignment:
| Q |
396 |
gttttcactatgattaagtttaatgggaataaacaaaatcaattc |
440 |
Q |
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||||||||||| ||||||||||||||||| || |||||||||||| |
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| T |
30598559 |
gttttcactataattaagtttaatgggaacaaccaaaatcaattc |
30598603 |
T |
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