View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14009_high_1 (Length: 808)

Name: NF14009_high_1
Description: NF14009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14009_high_1
NF14009_high_1
[»] chr5 (1 HSPs)
chr5 (16-791)||(3002766-3003542)


Alignment Details
Target: chr5 (Bit Score: 724; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 724; E-Value: 0
Query Start/End: Original strand, 16 - 791
Target Start/End: Original strand, 3002766 - 3003542
Alignment:
Q  16 acagacacatatggaaggtggaaaccatgggaattattcaatgcaaagtgcttataagttgtgcatcaatgagttgattaatgtcggtcatttgaaaatg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3002766 acagacacatatggaaggtggaaaccatgggaattattcaatgcaaagtgcttataagttgtgcatcaatgagttgattaatgtcggtcatttgaaaatg 3002865  T
Q  116 aaaggtgtggtagggaattgggattgcatttggtgtttgaaagttccatcgaaagtgaagaatttaatttggtgagtgtgtcataacgtgccgcttcata 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3002866 aaaggtgtggtagggaattgggattgcatttggtgtttgaaagttccatcgaaagtgaagaatttaatttggtgagtgtgtcataacgtgccgcttcata 3002965  T
Q  216 gaattcgtttgcaagatgaggagttgattgctctcctttatgtgttttttatgaagaatcgggtgaatatgtgttttacttgttttttcaatgtgcaggg 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  3002966 gaattcgtttgcaagatgaggagttgattgctctcctttatgtgttttttatgaagaatcgggtgaatatgttttttacttgttttttcaatgtgcaggg 3003065  T
Q  316 gccagggagtatgacctgttgcaaaatggtgatttgtgaaatgaaatattgggtattttacagcagttaagaacaaatgtaaagcagatgagtttttact 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3003066 gccagggagtatgacctgttgcaaaatggtgatttgtgaaatgaaatattgggtattttacagcagttaagaacaaatgtaaagcagatgagtttttact 3003165  T
Q  416 gcattacgatattttatctccgacatagtgtctctttgcggttattatttggagtatttggaaaagtcgtgatatccgcatctaggagaatgtttgttaa 515  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3003166 gcattatgatattttatctccgacatagtgtctctttgcggttattatttggagtattcggaaaagtcgtgatatccgcatctaggagaatgtttgttaa 3003265  T
Q  516 caatagcagcatattttttggcgcgctgagcagttatttcaaagctggtgcagg-gcagcggtacatcagtgcaggttcgacagcagtgcagggnnnnnn 614  Q
    ||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||          
T  3003266 caacagcagcatattttttggcgcgctgagtagttatttcaaagctggtgcaggtgcagcggtacatcagtgcaggttcgacagcagtgcagggaaaaaa 3003365  T
Q  615 nccagacacgccaagtttggacgctttgtgcttgctagaacggagtgtcactcttccatttgtttcattaatgaaggtgaagcttgtggccttctttccg 714  Q
     ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3003366 accagatacgccaagtttggacgctttgtgcttgctagaacggagtgtcactcttccatttgtttcattaatgaaggtgaagcttgtggccttctttccg 3003465  T
Q  715 ctgtctggtaggtgcaccatttgcagttagatggagcaacttttgagcttgaccctgagcgaatggtagacaacctt 791  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3003466 ctgtctggtaggtgcaccatttgcagttagatggagcaacttttgagcttgaccctgagcgaatggtagacaacctt 3003542  T

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