View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14009_high_10 (Length: 402)
Name: NF14009_high_10
Description: NF14009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14009_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 172 - 385
Target Start/End: Complemental strand, 23429736 - 23429523
Alignment:
| Q |
172 |
atgggaatttaattttaagagagtaaccatctgtaannnnnnnngtaattcgctgactaagcatgaaactttcatgaatatagctttggtttgacacatc |
271 |
Q |
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| T |
23429736 |
atgggaatttaattttaagagagtaaccatctgtaattttttttgtaattcgctgactaagcatgaaacttttatgaatatagctttggtttgacacatc |
23429637 |
T |
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| Q |
272 |
ccttttaaattaaatgctacgtaacaatccgacgcttttgtgtttcaaatggtactgtaatcaaatggtagtagcatgaaagtccagagcatttgtggaa |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23429636 |
ccttttaaattaaatgctacgtaacaatccgacgcttttgtgtttcaaatggtactgtaatcaaatggtagtagcatgaaagtccagagcatttgtggaa |
23429537 |
T |
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| Q |
372 |
tcgacagtatttat |
385 |
Q |
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|||||||||||||| |
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| T |
23429536 |
tcgacagtatttat |
23429523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 23429892 - 23429804
Alignment:
| Q |
16 |
atagatccagagacaattgccaaagtccatttgagaacattgttaattcgtaagtattaaacttgcaatttgtcagcgttgtaatatca |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23429892 |
atagatccagagacaattgccaaagtccatttgagaacattgttaattcgtaagtattaaacttgcaatttgtcagcgttgtaatatca |
23429804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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