View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14009_high_15 (Length: 266)
Name: NF14009_high_15
Description: NF14009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14009_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 117 - 244
Target Start/End: Complemental strand, 6348714 - 6348587
Alignment:
| Q |
117 |
taaatgaaggaagtgttagttctggaaatcgattgagacaattattaccttcccatgaaatgttaggattttaagtttcccctatcaagacattgtcatg |
216 |
Q |
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| T |
6348714 |
taaatgaaggaagtgttagttctggaaatcgattgagacaattattaccttcccatgaaatgttaggaatttaagtttcccctatctagacattgtcatg |
6348615 |
T |
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| Q |
217 |
ctttaatttgcctttacgagtcaaagtt |
244 |
Q |
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| T |
6348614 |
ctttaatttgcctttacgagtcaaagtt |
6348587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 6350043 - 6349972
Alignment:
| Q |
1 |
tggaaaaaagaatagatcaagcaaaagaacaacgaaagtaataaatgaaagaagttacaatagaacctgcgt |
72 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6350043 |
tggaaaaaagaatagatcaagcaaaagaacaacgaaagtaataaatgaaagaagttacaatagaacctgcgt |
6349972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 6351578 - 6351615
Alignment:
| Q |
72 |
taacaagcaaggaagaaatattaacatacaaaaaatat |
109 |
Q |
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| T |
6351578 |
taacaagcaaggaagaaatattaacatacaaaaaatat |
6351615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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