View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14009_high_17 (Length: 246)

Name: NF14009_high_17
Description: NF14009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14009_high_17
NF14009_high_17
[»] chr5 (5 HSPs)
chr5 (1-190)||(35803099-35803291)
chr5 (5-122)||(35854083-35854209)
chr5 (13-150)||(10520559-10520699)
chr5 (117-187)||(35851914-35851984)
chr5 (199-231)||(35803276-35803308)
[»] chr4 (5 HSPs)
chr4 (11-90)||(45881897-45881976)
chr4 (110-153)||(45862515-45862558)
chr4 (30-153)||(56209299-56209426)
chr4 (25-155)||(47292728-47292866)
chr4 (119-153)||(45882084-45882118)
[»] chr2 (2 HSPs)
chr2 (11-90)||(24351105-24351184)
chr2 (118-168)||(24350949-24350999)
[»] chr8 (1 HSPs)
chr8 (30-168)||(7962464-7962611)


Alignment Details
Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 35803099 - 35803291
Alignment:
Q  1 agtgataacgtcatcatcatacactaagcttgatatgaaaccctcttctttcagtttatctaatcgataaacaccttcatttatgaagttttgaa---ct 97  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||    
T  35803099 agtgataacatcatcatcatacactaagcttgatatgaaaccctcttctttcagtttatctaatcgataaacaccttcatttatgaagttttgaacttct 35803198  T
Q  98 tctcttttcttccctcaagaagaagagactttatccagccaatttgaatagatattgtgtagcaatgcagtgtgtgcctcactactatctcgt 190  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35803199 tctcttttcttccctctagaagaagagactttatccagccaatttgaatagatattgtgtagcaatgcagtgtgtgcctcactactatctcgt 35803291  T

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Target: chr5; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 5 - 122
Target Start/End: Complemental strand, 35854209 - 35854083
Alignment:
Q  5 ataacgtcatcatcatacactaagcttgatatgaaaccctcttctttcagtttatctaatcgata------aacaccttcatttatgaagttttgaa--- 95  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||| |||||       
T  35854209 ataacctcatcatcatacactaagcttgatatgaaaccctcttctttcagtttatctaatcgataaacagaaacaccttcatttatgaagtcttgaactt 35854110  T
Q  96 cttctcttttcttccctcaagaagaag 122  Q
    |||||||||||||||||  ||||||||    
T  35854109 cttctcttttcttccctatagaagaag 35854083  T

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Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 150
Target Start/End: Complemental strand, 10520699 - 10520559
Alignment:
Q  13 atcatcatacactaagcttgatatgaaaccctcttctttcagtttatctaatcgataaacaccttcatttatgaagttttgaa---cttctcttttcttc 109  Q
    |||||||| |||||| ||||||||||||||||| | ||| |||||||||| | |||| |||||||||||||||||||||| ||   |||||||| |||||    
T  10520699 atcatcatgcactaaacttgatatgaaaccctcattttttagtttatctacttgatagacaccttcatttatgaagttttcaacttcttctcttctcttc 10520600  T
Q  110 cctcaagaagaagagactttatccagccaatttgaatagat 150  Q
    |||| |  | ||||| |||| ||||||||||||||| ||||    
T  10520599 cctctaagataagagtctttctccagccaatttgaacagat 10520559  T

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Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 117 - 187
Target Start/End: Complemental strand, 35851984 - 35851914
Alignment:
Q  117 aagaagagactttatccagccaatttgaatagatattgtgtagcaatgcagtgtgtgcctcactactatct 187  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||||||| | ||||||| | ||||||    
T  35851984 aagaagagactttaaccagccaatttgaatagatattatgtagcaatgcagtttctgcctcagttctatct 35851914  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 35803276 - 35803308
Alignment:
Q  199 ctcaccactatctcgtgcctcactactatcttc 231  Q
    ||||| |||||||||||||||||||||||||||    
T  35803276 ctcactactatctcgtgcctcactactatcttc 35803308  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 45881897 - 45881976
Alignment:
Q  11 tcatcatcatacactaagcttgatatgaaaccctcttctttcagtttatctaatcgataaacaccttcatttatgaagtt 90  Q
    ||||||||||| | || ||||| |||||||||||||||||||||| | |||| | |||| ||||||||||||||||||||    
T  45881897 tcatcatcatagagtatgcttgttatgaaaccctcttctttcagtctgtctacttgatagacaccttcatttatgaagtt 45881976  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 110 - 153
Target Start/End: Original strand, 45862515 - 45862558
Alignment:
Q  110 cctcaagaagaagagactttatccagccaatttgaatagatatt 153  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  45862515 cctctagaagaagagactttatccagccaatttgaatagatatt 45862558  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 153
Target Start/End: Original strand, 56209299 - 56209426
Alignment:
Q  30 ttgatatgaaaccctcttctttcagtttatctaatcgataaacaccttcatttatgaagttttgaac----ttctcttttcttccctcaagaagaagaga 125  Q
    ||||||||||||||||||||| |||| ||| |  | |||| ||||| ||||||||||| || | ||     |||| ||||||| ||||  | ||||||||    
T  56209299 ttgatatgaaaccctcttcttccagtctatttgcttgatagacaccatcatttatgaaattgtcaatatctttctattttctttcctcttgcagaagaga 56209398  T
Q  126 ctttatccagccaatttgaatagatatt 153  Q
    ||||||| ||||||||||||||||||||    
T  56209399 ctttatcgagccaatttgaatagatatt 56209426  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 155
Target Start/End: Complemental strand, 47292866 - 47292728
Alignment:
Q  25 taagcttgatatgaaaccctcttctttcagtttatct--aatcgataaacaccttc---atttatgaagttttgaa---cttctcttttcttccctcaag 116  Q
    |||| |||||||||||||||||||||||||||| | |  | | |||| ||| | ||   |||||||||||||| ||   |||||||| |||| | |  ||    
T  47292866 taagtttgatatgaaaccctcttctttcagtttgtgtgtacttgatagacatcatctccatttatgaagttttcaatatcttctcttctctttcttgtag 47292767  T
Q  117 aagaagagactttatccagccaatttgaatagatattgt 155  Q
    ||||||| || |||||||||||||||||||| |||||||    
T  47292766 aagaagataccttatccagccaatttgaataaatattgt 47292728  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 153
Target Start/End: Original strand, 45882084 - 45882118
Alignment:
Q  119 gaagagactttatccagccaatttgaatagatatt 153  Q
    ||||| |||||||||||||||||||||||||||||    
T  45882084 gaagatactttatccagccaatttgaatagatatt 45882118  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 24351184 - 24351105
Alignment:
Q  11 tcatcatcatacactaagcttgatatgaaaccctcttctttcagtttatctaatcgataaacaccttcatttatgaagtt 90  Q
    ||||||||||||| |||  ||||||| |  |||||||||||||| ||||| | | |||||||||||||||||||||||||    
T  24351184 tcatcatcatacattaaatttgatataaggccctcttctttcagcttatcaacttgataaacaccttcatttatgaagtt 24351105  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 168
Target Start/End: Complemental strand, 24350999 - 24350949
Alignment:
Q  118 agaagagactttatccagccaatttgaatagatattgtgtagcaatgcagt 168  Q
    ||||||||||||||||||||| |||| ||||||||| | ||| ||||||||    
T  24350999 agaagagactttatccagccagtttgtatagatattatctagtaatgcagt 24350949  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 168
Target Start/End: Original strand, 7962464 - 7962611
Alignment:
Q  30 ttgatatgaaaccctcttctttcagtttatctaatc--gataaaca----ccttcatttatgaagttttgaa---cttctcttttcttccctcaagaaga 120  Q
    |||||| ||||||||||||||||||||| | || ||  |||||||     |||||||||||||| |||| ||   ||||| ||||||| ||   ||||||    
T  7962464 ttgatacgaaaccctcttctttcagtttgtatactccagataaaccatctccttcatttatgaaattttcaatatcttcttttttctttccaatagaaga 7962563  T
Q  121 agagactttatccagccaatttgaatagatattgtgtagcaatgcagt 168  Q
    |||||| |||||||||||||||||||| ||| |||   ||||||||||    
T  7962564 agagaccttatccagccaatttgaataaatactgtcctgcaatgcagt 7962611  T

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