View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14009_low_11 (Length: 370)
Name: NF14009_low_11
Description: NF14009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14009_low_11 |
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| [»] chr5 (3 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 102 - 370
Target Start/End: Original strand, 9038761 - 9039029
Alignment:
| Q |
102 |
tgaaagttaagaaaacaaatgacacttgttcttcggatgctacaatgcagaggaagtataatgagaggttggtcttcggtaaaatatgaattaagttgat |
201 |
Q |
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| T |
9038761 |
tgaaagttaagaaaacaaatgacacttgttcttcggatgctccaatgtagaggaagtataatgagagattggtcttcggtaaaatatgaattaagttgac |
9038860 |
T |
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| Q |
202 |
tttaagtgtggcgtatgatacaaaattaatatcgccaaatgactttctagatagattaatgttgggtaattcatagaaaagtctcaactgagatttgtga |
301 |
Q |
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| T |
9038861 |
tttaagtgtggtgtatgatacaaaattaatatcgccaaatgactttctggatagattaatgttggataattcatagaaaagtctcaactgagatttgtga |
9038960 |
T |
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| Q |
302 |
tttgtggggttggttctaaaggatgagattatgggagtgacagatttgaacgaggagaaatttcttaac |
370 |
Q |
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| T |
9038961 |
tttgtggggttggttttaaaggatgagattatgggagtgacagatttgaacgaggagaaatttcttaac |
9039029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 102 - 176
Target Start/End: Original strand, 9035587 - 9035661
Alignment:
| Q |
102 |
tgaaagttaagaaaacaaatgacacttgttcttcggatgctacaatgcagaggaagtataatgagaggttggtct |
176 |
Q |
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| T |
9035587 |
tgaaagttaagaaaacaaatgacacctgttcttcggatgctacaatgcagaggaagtatagtgagaggctggtct |
9035661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 304 - 343
Target Start/End: Original strand, 39815049 - 39815088
Alignment:
| Q |
304 |
tgtggggttggttctaaaggatgagattatgggagtgaca |
343 |
Q |
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| T |
39815049 |
tgtggcgttggttctaaaggatgagattatgggagtgaca |
39815088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 301 - 370
Target Start/End: Complemental strand, 9123371 - 9123302
Alignment:
| Q |
301 |
atttgtggggttggttctaaaggatgagattatgggagtgacagatttgaacgaggagaaatttcttaac |
370 |
Q |
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| T |
9123371 |
atttgtagggttggttctaaaggatgatattatgggagttacagatttgaatgaggagaaatttcttaac |
9123302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 301 - 370
Target Start/End: Complemental strand, 9131478 - 9131409
Alignment:
| Q |
301 |
atttgtggggttggttctaaaggatgagattatgggagtgacagatttgaacgaggagaaatttcttaac |
370 |
Q |
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| T |
9131478 |
atttgtagggttggttctaaaggatgatattatgggagttacagatttgaatgaggagaaatttcttaac |
9131409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 301 - 370
Target Start/End: Complemental strand, 24525239 - 24525170
Alignment:
| Q |
301 |
atttgtggggttggttctaaaggatgagattatgggagtgacagatttgaacgaggagaaatttcttaac |
370 |
Q |
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| T |
24525239 |
atttgtagggttggttctaaaggatgagattatgggagtgaatgatttgaatgaggagaagtttcttaac |
24525170 |
T |
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