View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14009_low_12 (Length: 364)

Name: NF14009_low_12
Description: NF14009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14009_low_12
NF14009_low_12
[»] chr8 (2 HSPs)
chr8 (1-347)||(9028505-9028851)
chr8 (121-245)||(22573135-22573259)
[»] chr7 (6 HSPs)
chr7 (46-248)||(23318854-23319056)
chr7 (132-238)||(41482422-41482528)
chr7 (137-238)||(2333993-2334094)
chr7 (133-249)||(39594631-39594747)
chr7 (132-228)||(24429707-24429803)
chr7 (142-240)||(39644909-39645007)
[»] chr4 (7 HSPs)
chr4 (132-245)||(45413772-45413885)
chr4 (132-240)||(2183300-2183408)
chr4 (121-240)||(33235785-33235904)
chr4 (132-240)||(36625538-36625646)
chr4 (127-249)||(33451319-33451441)
chr4 (184-239)||(19181467-19181522)
chr4 (132-245)||(26635263-26635376)
[»] chr1 (7 HSPs)
chr1 (132-245)||(26793757-26793870)
chr1 (142-236)||(45792690-45792784)
chr1 (142-238)||(50004908-50005004)
chr1 (132-239)||(49236173-49236280)
chr1 (127-217)||(19806753-19806843)
chr1 (132-245)||(6768262-6768375)
chr1 (132-248)||(9383229-9383345)
[»] chr3 (2 HSPs)
chr3 (132-252)||(40416941-40417061)
chr3 (184-245)||(48936355-48936414)
[»] chr5 (1 HSPs)
chr5 (127-248)||(34731266-34731387)
[»] chr2 (3 HSPs)
chr2 (142-237)||(7670385-7670480)
chr2 (187-245)||(16567767-16567825)
chr2 (127-248)||(40054460-40054581)
[»] chr6 (2 HSPs)
chr6 (133-214)||(129102-129183)
chr6 (132-217)||(8547437-8547522)


Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 9028505 - 9028851
Alignment:
Q  1 ttggtgttccagagggtgggaaagaagaaacacatgggnnnnnnncaattgagtaaaaatagcgtttgttgcagatggtgagagttgaagaatggttttg 100  Q
    ||||||||||||||||||| ||||||||||||||||||       ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  9028505 ttggtgttccagagggtggaaaagaagaaacacatgggaaaaaaacaattgagtaaaattagcgtttgttgcagatggtgagagttgaagaagggttttg 9028604  T
Q  101 gaggaaaatgaaaacacacttagttatatcttatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaa 200  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  9028605 gaggaaaatgaaaacacgcttagttatatcctatcaggttgctaacccatcaaaaaccaaggataagaattacaaaggttcaataggataggattaaaaa 9028704  T
Q  201 taggtttaaattatcctattctgttggtacaccaaacaaccgatttaagcagatcatatcccaccaaacgggccgaaaatggcaaactttgtccattttt 300  Q
    ||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  9028705 taggtttaaattatccttttatgttggtgcaccaaacaaccgatttaagcagatcatatcccaccaaacaagccgaaaatggcaaactttgtccattttt 9028804  T
Q  301 agacaatgcagctgcaattccactcccttctctaaaaatctgagaac 347  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  9028805 agacaatgcagctgcaattccactgccttctctaaaaatctgagaac 9028851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 121 - 245
Target Start/End: Complemental strand, 22573259 - 22573135
Alignment:
Q  121 tagttatatcttatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctatt 220  Q
    ||||| |||| ||||| |||| ||||||| ||||||| || | ||||||||||||||||||||||||||||||||| ||| ||||| || ||||| | |     
T  22573259 tagttttatcctatcatgttgttaacccaccaaaaactaaggataagaattacaaaggttcaataggataggattagaaacaggttaaacttatcatttc 22573160  T
Q  221 ctgttggtacaccaaacaaccgatt 245  Q
    |||||||| ||||||||||| ||||    
T  22573159 ctgttggtgcaccaaacaacggatt 22573135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 8e-40; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 46 - 248
Target Start/End: Original strand, 23318854 - 23319056
Alignment:
Q  46 caattgagtaaaaatagcgtttgttgcagatggtgagagttgaagaatggttttggaggaaaatgaaaacacactt-----agttatatcttatcaggtt 140  Q
    ||||||||||||  |||||||||||||||| || |||||| |||||| |||||||||||||| ||||||||| |||     ||||||||  || ||        
T  23318854 caattgagtaaagttagcgtttgttgcagaaggcgagagtcgaagaagggttttggaggaaactgaaaacacgcttctgatagttatatgctacca---- 23318949  T
Q  141 gctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtacaccaaacaac 240  Q
     ||||||||||||||||||| | ||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |  |||||||  ||||||||||    
T  23318950 -ctaacccatcaaaaaccaaggataaaaattacaaaggctcaataggataggattaaaaataggtttaaattatcctttcatgttggtggaccaaacaac 23319048  T
Q  241 cgatttaa 248  Q
     |||||||    
T  23319049 agatttaa 23319056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 132 - 238
Target Start/End: Original strand, 41482422 - 41482528
Alignment:
Q  132 tatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtaca 231  Q
    |||||||||||||||||| ||||||| || | ||| ||| ||||||| | | ||||||| |||||||||||||||||| ||||||| | |||||||| ||    
T  41482422 tatcaggttgctaacccaccaaaaactaaggataaaaataacaaagggtgagtaggatatgattaaaaataggtttaagttatcctttcctgttggtgca 41482521  T
Q  232 ccaaaca 238  Q
    |||||||    
T  41482522 ccaaaca 41482528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 137 - 238
Target Start/End: Original strand, 2333993 - 2334094
Alignment:
Q  137 ggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtacaccaaa 236  Q
    ||||||||||| | |||||||||  | ||| ||| ||||| | | |||||||||||||||||||||||||||| |||||| || || ||||| |||||||    
T  2333993 ggttgctaaccaaccaaaaaccagagataaaaataacaaaaggtgaataggataggattaaaaataggtttaagttatccaatcctattggtgcaccaaa 2334092  T
Q  237 ca 238  Q
    ||    
T  2334093 ca 2334094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 249
Target Start/End: Complemental strand, 39594747 - 39594631
Alignment:
Q  133 atcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtacac 232  Q
    |||| |||||||||||||||||||| || | ||| ||||||||||| | |||| |||| |||||  ||||||||||| ||| | |||  | ||||| |||    
T  39594747 atcatgttgctaacccatcaaaaactaaggataaaaattacaaaggatgaatatgataagattagtaataggtttaatttagcatatcttattggtgcac 39594648  T
Q  233 caaacaaccgatttaag 249  Q
    |||||||| ||||||||    
T  39594647 caaacaacggatttaag 39594631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 132 - 228
Target Start/End: Complemental strand, 24429803 - 24429707
Alignment:
Q  132 tatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggt 228  Q
    |||||||||||||||||| ||||||| || | ||| ||| ||||||| | | || |||||||||| |||||| ||||||||||| | |||| |||||    
T  24429803 tatcaggttgctaacccaccaaaaactaaggataaaaataacaaagggtgagtaagataggattataaatagttttaaattatcattttctattggt 24429707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 240
Target Start/End: Complemental strand, 39645007 - 39644909
Alignment:
Q  142 ctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtacaccaaacaac 240  Q
    |||||||| ||||||| || | ||| ||| ||||||| | | ||||||||||||| |||| ||||||| ||||||| |||| ||||  |||||||||||    
T  39645007 ctaacccaccaaaaactaaggataaaaataacaaaggatgagtaggataggattataaatgggtttaagttatccttttctattggcgcaccaaacaac 39644909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 245
Target Start/End: Original strand, 45413772 - 45413885
Alignment:
Q  132 tatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtaca 231  Q
    |||||||||||||||||| ||||||| || | ||| ||| |||||||||  ||||||||||||   |||||||||||| ||||||| | || ||||| ||    
T  45413772 tatcaggttgctaacccaccaaaaactaaggataaaaataacaaaggttagataggataggataggaaataggtttaatttatcctttcctattggtgca 45413871  T
Q  232 ccaaacaaccgatt 245  Q
    ||||||||||||||    
T  45413872 ccaaacaaccgatt 45413885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 132 - 240
Target Start/End: Complemental strand, 2183408 - 2183300
Alignment:
Q  132 tatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtaca 231  Q
    |||||||||||||||||| ||||||  || | ||| ||| |||||||||  |||||||||||||  ||||  |||||| ||||||| |||| ||||| ||    
T  2183408 tatcaggttgctaacccaccaaaaattaaggataaaaataacaaaggttggataggataggattggaaatgagtttaatttatccttttctattggtgca 2183309  T
Q  232 ccaaacaac 240  Q
    |||||||||    
T  2183308 ccaaacaac 2183300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 240
Target Start/End: Original strand, 33235785 - 33235904
Alignment:
Q  121 tagttatatcttatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctatt 220  Q
    ||||| |||| |||||  |||||||| |||||||||  || | ||| |||||||||||||||||||||||||||||| || ||||| || ||||  | ||    
T  33235785 tagttttatcctatcatattgctaactcatcaaaaattaaggataataattacaaaggttcaataggataggattaagaacaggttaaacttattatttt 33235884  T
Q  221 ctgttggtacaccaaacaac 240  Q
    || ||||| |||||| ||||    
T  33235885 ctattggtgcaccaagcaac 33235904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 132 - 240
Target Start/End: Original strand, 36625538 - 36625646
Alignment:
Q  132 tatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtaca 231  Q
    ||||| |||||||||||| ||||||  || | | ||||||||||||| | ||||||||||||||   ||||||||||| ||||| ||| || || || ||    
T  36625538 tatcatgttgctaacccaacaaaaagtaaggattagaattacaaagggtgaataggataggattcgtaataggtttaatttatcatatcctattagtgca 36625637  T
Q  232 ccaaacaac 240  Q
    |||||||||    
T  36625638 ccaaacaac 36625646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 249
Target Start/End: Complemental strand, 33451441 - 33451319
Alignment:
Q  127 tatcttatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttg 226  Q
    |||||||||| |||| ||||||||||||||| || | | | ||||||||||| | |||||||||| | ||  ||||||||||  ||||| |||  | |||    
T  33451441 tatcttatcatgttgttaacccatcaaaaactaaggattataattacaaaggatgaataggatagaagtagtaataggtttattttatcatatcatattg 33451342  T
Q  227 gtacaccaaacaaccgatttaag 249  Q
    || |||||||||||  |||||||    
T  33451341 gtgcaccaaacaacgaatttaag 33451319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 239
Target Start/End: Original strand, 19181467 - 19181522
Alignment:
Q  184 taggataggattaaaaataggtttaaattatcctattctgttggtacaccaaacaa 239  Q
    ||||||||||||| |||||||||||| ||||| |||  ||||||| ||||||||||    
T  19181467 taggataggattagaaataggtttaatttatcatatcatgttggtgcaccaaacaa 19181522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 245
Target Start/End: Original strand, 26635263 - 26635376
Alignment:
Q  132 tatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtaca 231  Q
    |||||||||||||||||| ||||||| || | ||||||| | |||||   | |||||||| |||  ||||||||| || ||||| |||  ||||||| ||    
T  26635263 tatcaggttgctaacccaccaaaaactaaggataagaataataaaggaggagtaggatagaattggaaataggttaaatttatcatatcatgttggtgca 26635362  T
Q  232 ccaaacaaccgatt 245  Q
    ||||| ||| ||||    
T  26635363 ccaaaaaacggatt 26635376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 245
Target Start/End: Complemental strand, 26793870 - 26793757
Alignment:
Q  132 tatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtaca 231  Q
    |||||||||||||||||| ||||||| ||   ||| ||| ||||||||| | ||||||||||||| ||||| |||||| ||||||| |||| ||||| ||    
T  26793870 tatcaggttgctaacccaccaaaaactaagaataaaaataacaaaggttgattaggataggattagaaataagtttaagttatccttttctattggtgca 26793771  T
Q  232 ccaaacaaccgatt 245  Q
    ||||||||| ||||    
T  26793770 ccaaacaacggatt 26793757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 236
Target Start/End: Original strand, 45792690 - 45792784
Alignment:
Q  142 ctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtacaccaaa 236  Q
    |||||||| ||||||| || | ||||||||||||||| ||||||||||||||||| ||| | ||| || ||||| | |||||||||| |||||||    
T  45792690 ctaacccaccaaaaactaaggataagaattacaaaggctcaataggataggattagaaacatgttaaacttatcattttctgttggtgcaccaaa 45792784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 238
Target Start/End: Original strand, 50004908 - 50005004
Alignment:
Q  142 ctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtacaccaaaca 238  Q
    |||||||| ||||||| || | ||| ||| ||||||| | | ||||||||||||| |||||||||||||||||||| || | ||||| |||||||||    
T  50004908 ctaacccaccaaaaactaaggataaaaataacaaagggtgattaggataggattagaaataggtttaaattatccttttttattggtgcaccaaaca 50005004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 239
Target Start/End: Complemental strand, 49236280 - 49236173
Alignment:
Q  132 tatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtaca 231  Q
    |||||||||||||||||| |||||||||| | || |||| | |||||||   ||||||||||    ||||| |||||| ||||||| |||| ||||| ||    
T  49236280 tatcaggttgctaacccaccaaaaaccaaggatatgaataagaaaggttgggtaggataggaaatgaaatatgtttaatttatccttttctattggtgca 49236181  T
Q  232 ccaaacaa 239  Q
    ||||||||    
T  49236180 ccaaacaa 49236173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 217
Target Start/End: Original strand, 19806753 - 19806843
Alignment:
Q  127 tatcttatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcct 217  Q
    |||| |||||||||| ||||||| ||||||| || | | ||||  ||||||  | ||||||||||||||| |||||||||||| |||||||    
T  19806753 tatcatatcaggttgttaacccaccaaaaactaaggattagaaaaacaaagagtgaataggataggattagaaataggtttaatttatcct 19806843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 132 - 245
Target Start/End: Complemental strand, 6768375 - 6768262
Alignment:
Q  132 tatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtaca 231  Q
    ||||||||| |||||||| ||||||  || | ||| ||| |||||||||  |||| |||||||   ||||| |||||| ||||| | |||| ||||||||    
T  6768375 tatcaggttcctaacccaccaaaaattaaggataaaaataacaaaggttggatagaataggataggaaataagtttaatttatcattttctattggtaca 6768276  T
Q  232 ccaaacaaccgatt 245  Q
    ||||||||| ||||    
T  6768275 ccaaacaacagatt 6768262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 248
Target Start/End: Original strand, 9383229 - 9383345
Alignment:
Q  132 tatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtaca 231  Q
    |||||||||||||||||||||||||  || | | | ||| ||||||| | | ||||||| ||||| |||| ||||||| ||||||  | || ||||| ||    
T  9383229 tatcaggttgctaacccatcaaaaattaaggatgaaaataacaaagggtgagtaggataagattagaaattggtttaatttatccgttcctattggtgca 9383328  T
Q  232 ccaaacaaccgatttaa 248  Q
    ||||||||  |||||||    
T  9383329 ccaaacaatggatttaa 9383345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 132 - 252
Target Start/End: Complemental strand, 40417061 - 40416941
Alignment:
Q  132 tatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtaca 231  Q
    |||||||||||||||| | |||||||||| | ||||||| | ||||| |   |||||||||||||||||||  ||||| ||||| | |||||||| | ||    
T  40417061 tatcaggttgctaaccaaacaaaaaccaaggataagaataataaagggttggtaggataggattaaaaatatatttaatttatcattttctgttgatgca 40416962  T
Q  232 ccaaacaaccgatttaagcag 252  Q
    ||||||||| |||| ||||||    
T  40416961 ccaaacaacggattgaagcag 40416941  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 245
Target Start/End: Original strand, 48936355 - 48936414
Alignment:
Q  184 taggataggattaaaaataggtttaaattatcctattctgttggtacaccaaacaaccgatt 245  Q
    ||||||||||||||||| ||||||||||||||   | |||||||| ||||||||||| ||||    
T  48936355 taggataggattaaaaacaggtttaaattatc--ttcctgttggtgcaccaaacaacggatt 48936414  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 248
Target Start/End: Complemental strand, 34731387 - 34731266
Alignment:
Q  127 tatcttatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttg 226  Q
    |||| |||||||||||||||||| | ||||| || | | | ||| ||||||| |  ||||||||||||||| ||||||||||  ||||||| | || |||    
T  34731387 tatcctatcaggttgctaacccagctaaaactaaggattaaaataacaaaggattgataggataggattaacaataggtttagtttatcctttcctattg 34731288  T
Q  227 gtacaccaaacaaccgatttaa 248  Q
    || ||||||||||  |||||||    
T  34731287 gtgcaccaaacaagggatttaa 34731266  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 237
Target Start/End: Complemental strand, 7670480 - 7670385
Alignment:
Q  142 ctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtacaccaaac 237  Q
    |||||||| ||||||  || | ||||||||||||| | ||||||||||||||||| ||| ||||| || ||||| | |||| ||||| ||||||||    
T  7670480 ctaacccaccaaaaattaaggataagaattacaaaagctcaataggataggattagaaacaggttaaacttatcattttctattggtgcaccaaac 7670385  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 245
Target Start/End: Original strand, 16567767 - 16567825
Alignment:
Q  187 gataggattaaaaataggtttaaattatcctattctgttggtacaccaaacaaccgatt 245  Q
    |||||||||| ||||||||| || ||||||| |||||||||| ||||||||||| ||||    
T  16567767 gataggattagaaataggttaaacttatccttttctgttggtgcaccaaacaacggatt 16567825  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 248
Target Start/End: Original strand, 40054460 - 40054581
Alignment:
Q  127 tatcttatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttg 226  Q
    |||| ||| |||||||||||||| | ||||| || | | | ||| ||||||| |  ||||||||||||||| ||||||||||  ||||| | |||| |||    
T  40054460 tatcctattaggttgctaacccagctaaaactaaggattaaaataacaaaggattgataggataggattaacaataggtttagtttatcattttctattg 40054559  T
Q  227 gtacaccaaacaaccgatttaa 248  Q
    || ||||||||||  |||||||    
T  40054560 gtgcaccaaacaagagatttaa 40054581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 214
Target Start/End: Original strand, 129102 - 129183
Alignment:
Q  133 atcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattat 214  Q
    |||| ||||||| |||||||||||| || | ||| ||| ||||||| | |||| |||||||||||||||  |||||| ||||    
T  129102 atcatgttgctagcccatcaaaaactaaagataaaaataacaaagggtgaatatgataggattaaaaatgagtttaagttat 129183  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 217
Target Start/End: Original strand, 8547437 - 8547522
Alignment:
Q  132 tatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcct 217  Q
    ||||| |||||||||||| ||||||| ||   ||| ||| ||||||| | |||| |||| ||||| |||||||||||| |||||||    
T  8547437 tatcatgttgctaacccaccaaaaactaagtataaaaataacaaagggtgaatatgataagattagaaataggtttaagttatcct 8547522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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