View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14009_low_13 (Length: 292)
Name: NF14009_low_13
Description: NF14009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14009_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 11 - 273
Target Start/End: Original strand, 3569566 - 3569828
Alignment:
| Q |
11 |
cagagacatttgccaagaaccgtgaactcgaggtcatccacagtcgatgggctatgttgggtgccttaggatgtgtcttccctgagctcttatctcgcaa |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3569566 |
cagagacatttgccaagaaccgtgaactcgaggtcatccacagtagatgggctatgttgggtgccttgggatgtgtcttccctgagctcttatctcgcaa |
3569665 |
T |
|
| Q |
111 |
tggtgtcaaattcggtgaggccgtgtggttcaaggcaggatcccaaatctttagtgagggtggacttgactacttgggtaacccaagtctagtccatgca |
210 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3569666 |
tggtgtacaattcggtgaggccgtgtggttcaaggcaggatcccaaatctttagtgagggtggacttgactacttgggtaacccaagtctagtccatgca |
3569765 |
T |
|
| Q |
211 |
caaagcatccttgctatatgggcagtccaagttatcttaatgggcgccgtggagggttaccgt |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3569766 |
caaagcatccttgctatatgggcagtccaagttatcttaatgggcgccgtggagggttaccgt |
3569828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 11 - 273
Target Start/End: Original strand, 3563918 - 3564180
Alignment:
| Q |
11 |
cagagacatttgccaagaaccgtgaactcgaggtcatccacagtcgatgggctatgttgggtgccttaggatgtgtcttccctgagctcttatctcgcaa |
110 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3563918 |
cagagacatttgccaaaaaccgtgaactcgaggtcatccacagtagatgggctatgttgggtgccttgggatgtgtcttccctgagctcttatctcgcaa |
3564017 |
T |
|
| Q |
111 |
tggtgtcaaattcggtgaggccgtgtggttcaaggcaggatcccaaatctttagtgagggtggacttgactacttgggtaacccaagtctagtccatgca |
210 |
Q |
| |
|
||||||||||||||| ||||| || ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3564018 |
tggtgtcaaattcggcgaggctgtatggttcaaggcaggatcccaaatttttagtgagggtgggcttgactacttgggtaacccaagtctagtccatgca |
3564117 |
T |
|
| Q |
211 |
caaagcatccttgctatatgggcagtccaagttatcttaatgggcgccgtggagggttaccgt |
273 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| || || |||||||||||| |
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|
| T |
3564118 |
caaagcatccttgctatatgggctgtccaagttatcttaatgggtgctgttgagggttaccgt |
3564180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 11 - 273
Target Start/End: Original strand, 3575897 - 3576159
Alignment:
| Q |
11 |
cagagacatttgccaagaaccgtgaactcgaggtcatccacagtcgatgggctatgttgggtgccttaggatgtgtcttccctgagctcttatctcgcaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || || || |||||||||||||| |||||||| |||||||| |
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| T |
3575897 |
cagagacatttgccaagaaccgtgaactcgaggtcatccacagtagatgggctatgttaggagctttgggatgtgtcttccccgagctcttgtctcgcaa |
3575996 |
T |
|
| Q |
111 |
tggtgtcaaattcggtgaggccgtgtggttcaaggcaggatcccaaatctttagtgagggtggacttgactacttgggtaacccaagtctagtccatgca |
210 |
Q |
| |
|
|||||| |||||||| ||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||| |
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| T |
3575997 |
tggtgtgaaattcggcgaggctgtgtggttcaaggcaggatctcaaatctttagtgagggaggacttgactacttgggtaacccaagcctagtccacgca |
3576096 |
T |
|
| Q |
211 |
caaagcatccttgctatatgggcagtccaagttatcttaatgggcgccgtggagggttaccgt |
273 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||| || || |||||||||||| |
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|
| T |
3576097 |
caaagtatccttgctatatgggctgtccaagttatcttaatgggagctgttgagggttaccgt |
3576159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 11 - 273
Target Start/End: Complemental strand, 3585321 - 3585059
Alignment:
| Q |
11 |
cagagacatttgccaagaaccgtgaactcgaggtcatccacagtcgatgggctatgttgggtgccttaggatgtgtcttccctgagctcttatctcgcaa |
110 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||| || ||||| ||||||| |
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|
| T |
3585321 |
cagagacatttgccaaaaaccgtgaactcgaggtcattcatagtagatgggctatgttgggtgccttaggatgtgtcttcccagaactcttggctcgcaa |
3585222 |
T |
|
| Q |
111 |
tggtgtcaaattcggtgaggccgtgtggttcaaggcaggatcccaaatctttagtgagggtggacttgactacttgggtaacccaagtctagtccatgca |
210 |
Q |
| |
|
|||||| |||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
3585221 |
tggtgtgaaattcggtgaggctgtgtggtttaaggcaggatctcaaatctttagtgagggtggacttgactacttgggtaacccaagcctagtccatgca |
3585122 |
T |
|
| Q |
211 |
caaagcatccttgctatatgggcagtccaagttatcttaatgggcgccgtggagggttaccgt |
273 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||||||| || || || ||||||||| |
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|
| T |
3585121 |
caaagcatccttgctatttgggctgtccaagttatcttaatgggagctgttgaaggttaccgt |
3585059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 28 - 269
Target Start/End: Original strand, 3572630 - 3572871
Alignment:
| Q |
28 |
aaccgtgaactcgaggtcatccacagtcgatgggctatgttgggtgccttaggatgtgtcttccctgagctcttatctcgcaatggtgtcaaattcggtg |
127 |
Q |
| |
|
||||||||||| |||||||| |||||| | |||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||| |||||||||| |
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|
| T |
3572630 |
aaccgtgaactagaggtcattcacagtaggtgggctatgttgggagccttgggatgtgtcttccctgagctcttggctcgcaatggtgttaaattcggtg |
3572729 |
T |
|
| Q |
128 |
aggccgtgtggttcaaggcaggatcccaaatctttagtgagggtggacttgactacttgggtaacccaagtctagtccatgcacaaagcatccttgctat |
227 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
3572730 |
aggccgtgtggttcaaggcaggatctcaaatctttagtgagggtggacttgactacttgggaaatccaagtctagtccatgcacaaagcatccttgctat |
3572829 |
T |
|
| Q |
228 |
atgggcagtccaagttatcttaatgggcgccgtggagggtta |
269 |
Q |
| |
|
|||||| |||||||||||||||||||| || || |||||||| |
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|
| T |
3572830 |
atgggctgtccaagttatcttaatgggtgctgttgagggtta |
3572871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 273
Target Start/End: Original strand, 13275846 - 13276106
Alignment:
| Q |
11 |
cagagacatttgccaagaaccgtgaactcgaggtcatccacagtcgatgggctatgttgggtgccttaggatgtgtcttccctgagctcttatctcgcaa |
110 |
Q |
| |
|
||||||||||||| || ||||||||||| ||||| |||||| | ||||||| ||||| | ||| |||| ||||| |||||| || | || | || || |
|
|
| T |
13275846 |
cagagacatttgcaaaaaaccgtgaacttgaggttatccactctagatgggccatgttcga-gccctaggttgtgtgttcccttagttgttggcgcgtaa |
13275944 |
T |
|
| Q |
111 |
tggtgtcaaattcggtgaggccgtgtggttcaaggcaggatcccaaatctttagtgagggtggacttgactacttgggtaacccaagtctagtccatgca |
210 |
Q |
| |
|
||| |||| ||| || || | || |||||||||||| | ||||||||||||||||||||||| || ||||| ||||| ||||||||||| || |||||| |
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|
| T |
13275945 |
tggcgtcacatttggcgaagtcg-gtggttcaaggccaggtcccaaatctttagtgagggtgggctagactatttgggcaacccaagtcttgtacatgca |
13276043 |
T |
|
| Q |
211 |
caaagcatccttgctatatgggcagtccaagttatcttaatgggcgccgtggagggttaccgt |
273 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||| ||||| || || |||||||||||| |
|
|
| T |
13276044 |
caaagcatccttgccatatgggcctgccaagttatcttgatgggtgctgttgagggttaccgt |
13276106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 154 - 273
Target Start/End: Original strand, 3577896 - 3578015
Alignment:
| Q |
154 |
caaatctttagtgagggtggacttgactacttgggtaacccaagtctagtccatgcacaaagcatccttgctatatgggcagtccaagttatcttaatgg |
253 |
Q |
| |
|
|||||||||||||| || || ||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||| |||| || ||||||||||| |
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| T |
3577896 |
caaatctttagtgatggagggcttgactacttgggtaacccaagcctagtccacgcacaaagcatccttgctatttgggttgtcctagctatcttaatgg |
3577995 |
T |
|
| Q |
254 |
gcgccgtggagggttaccgt |
273 |
Q |
| |
|
| || || |||||||||||| |
|
|
| T |
3577996 |
gagctgttgagggttaccgt |
3578015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 11 - 273
Target Start/End: Original strand, 38356933 - 38357195
Alignment:
| Q |
11 |
cagagacatttgccaagaaccgtgaactcgaggtcatccacagtcgatgggctatgttgggtgccttaggatgtgtcttccctgagctcttatctcgcaa |
110 |
Q |
| |
|
|||||||||| ||||||||||||||||| || |||||||| ||| | |||||||||||||| ||||| |||||||| ||||| ||||| || |||||||| |
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|
| T |
38356933 |
cagagacattcgccaagaaccgtgaacttgaagtcatccatagtaggtgggctatgttgggagccttgggatgtgttttcccagagcttttgtctcgcaa |
38357032 |
T |
|
| Q |
111 |
tggtgtcaaattcggtgaggccgtgtggttcaaggcaggatcccaaatctttagtgagggtggacttgactacttgggtaacccaagtctagtccatgca |
210 |
Q |
| |
|
|||||| |||||||||||||| || ||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
38357033 |
tggtgttaaattcggtgaggctgtatggttcaaggccggatcccagatctttagcgagggtggacttgactacttgggtaacccaagtttggtccatgct |
38357132 |
T |
|
| Q |
211 |
caaagcatccttgctatatgggcagtccaagttatcttaatgggcgccgtggagggttaccgt |
273 |
Q |
| |
|
|| ||||| ||||| || ||||| |||||||||||| |||||||| || || ||||||||| |
|
|
| T |
38357133 |
cagagcattcttgccatctgggctacccaagttatcttgatgggcgctgttgaaggttaccgt |
38357195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 233
Target Start/End: Original strand, 42602831 - 42602952
Alignment:
| Q |
112 |
ggtgtcaaattcggtgaggccgtgtggttcaaggcaggatcccaaatctttagtgagggtggacttgactacttgggtaacccaagtctagtccatgcac |
211 |
Q |
| |
|
||||| |||||||||||||| |||||||| ||||| || |||| ||||| ||||||||| |||||||| ||||| ||||||| || ||||||| | |
|
|
| T |
42602831 |
ggtgttaaattcggtgaggctgtgtggtttaaggctggtgcccagatcttctctgagggtggccttgactatttgggcaacccaaacctgatccatgctc |
42602930 |
T |
|
| Q |
212 |
aaagcatccttgctatatgggc |
233 |
Q |
| |
|
| ||||| ||||| || ||||| |
|
|
| T |
42602931 |
agagcattcttgcaatctgggc |
42602952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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