View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14009_low_14 (Length: 284)
Name: NF14009_low_14
Description: NF14009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14009_low_14 |
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| [»] chr4 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 38729822 - 38729560
Alignment:
| Q |
18 |
aagcttgatattgatatgtctgcattttcagatatatatggagaaagctggatttctaccaactccatctacgtatgcttgtctcttggaaatgcatgct |
117 |
Q |
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| T |
38729822 |
aagcttgatattgctatgtctgcattttcagatat----ggagaaagctggatttctaccaactccatctacatatgcttgtctcttggaaatgcatgct |
38729727 |
T |
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| Q |
118 |
gcgtctggacaaattgatcatgccatcaaactgtacaattcaatgactaatgcaggtttaaggccaggcctaagcacttacactgttcttttatctctac |
217 |
Q |
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| T |
38729726 |
gcgtctggacaaatcgatcatgctatgaaactgtacaattcaatgactaatgcaggtttaaggccaggcctgagcacttatactgttcttttatctctac |
38729627 |
T |
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| Q |
218 |
tggctaataagaagcttgtggatgttgctgccaaagttctacttgaaatgaagaccatgggatattc |
284 |
Q |
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| T |
38729626 |
ttgctaataagaagctggtggatgttgctgccaaagttctacttgaaatgaagacaatgggatattc |
38729560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 385720 - 385982
Alignment:
| Q |
18 |
aagcttgatattgatatgtctgcattttcagatatatatggagaaagctggatttctaccaactccatctacgtatgcttgtctcttggaaatgcatgct |
117 |
Q |
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||||||||||||| |||||||||||||||||| || |||||||||||||||||||| ||||| |||||| || |||||||| ||||||||||||||| |
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| T |
385720 |
aagcttgatattgctatgtctgcattttcagacat----ggagaaagctggatttctactaactctatctacatacgcttgtctattggaaatgcatgct |
385815 |
T |
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| Q |
118 |
gcgtctggacaaattgatcatgccatcaaactgtacaattcaatgactaatgcaggtttaaggccaggcctaagcacttacactgttcttttatctctac |
217 |
Q |
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| T |
385816 |
tcatccggacaaattgatcatgccatgaaactgtacaattcaatgactaatgcaggtttaaggccaggcctaagcacttacactgttcttttatctctac |
385915 |
T |
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| Q |
218 |
tggctaataagaagcttgtggatgttgctgccaaagttctacttgaaatgaagaccatgggatattc |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
385916 |
tggctaataagaagcttgtggatgttgctgccaaagttctacttgaaatgaagacgatgggatattc |
385982 |
T |
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