View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14009_low_19 (Length: 241)
Name: NF14009_low_19
Description: NF14009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14009_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 143; Significance: 3e-75; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 35803058 - 35802892
Alignment:
| Q |
1 |
atttcttttagaaaatactctaaaatcagaaaatggactgtgggaatatcagaggctaaagaacaaatagccatcatccgagtctcagggaatatggata |
100 |
Q |
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| T |
35803058 |
atttcttttagaaaatactctaaagtcagaaaatggactgtgggaatatcagaggctaaagaacaaatagccatcatccgagcctcagggactatggata |
35802959 |
T |
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| Q |
101 |
gtgatatcgtcacaagtaatttcattcagaagattggtatggtcaaagattcaaaaatattcaaggc |
167 |
Q |
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| T |
35802958 |
gtgacatcgtcacaagtaatttcattgagaagattggtatggtcaaagattcaaaaaaattcaaggc |
35802892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 35854253 - 35854396
Alignment:
| Q |
1 |
atttcttttagaaaatactctaaaatcagaaaatggactgtgggaatatcagaggctaaagaacaaatagccatcatccgagtctcagggaatatggata |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| || |
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| T |
35854253 |
atttcttttagaaaatactctaaaggcagaaaatggactgtggcaatatcagaggctaaagaacaaattgccatcatccgagtctcagggaatatggtta |
35854352 |
T |
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| Q |
101 |
gtgatatcgtcacaagtaatttcattcagaagattggtatggtc |
144 |
Q |
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| T |
35854353 |
gtgacatcgtcacaagtaatttcattgagaagattggaatggtc |
35854396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 10520757 - 10520925
Alignment:
| Q |
1 |
atttcttttagaaaatactctaaaatcagaaaatggactgtgggaatatcagaggctaaagaacaaatagccatcatccgagtctcagggaatatggata |
100 |
Q |
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||||||||| ||||||||||||| | |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||| || |
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| T |
10520757 |
atttcttttgaaaaatactctaaagttagaaaatggactgttggaatatcagaggcgaaagaacaaatagccatcatccgagtctcagggactatgggta |
10520856 |
T |
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| Q |
101 |
gtgatatcgtcacaagtaatttcattcagaagattggtatggtcaaagattcaaaaatattcaaggctg |
169 |
Q |
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| T |
10520857 |
cggatattgtcacaagtaagttcattgagaagattggtatggtcaaagcgtcaaaagaaatcaaggctg |
10520925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 35802900 - 35802862
Alignment:
| Q |
187 |
attcaaggctgttattgtccggattgacagtgtaggagg |
225 |
Q |
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| T |
35802900 |
attcaaggcggttattgtccggattgacagtgtaggagg |
35802862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 56209218 - 56209141
Alignment:
| Q |
13 |
aaatactctaaaatcagaaaatggactgtgggaatatcagaggctaaagaacaaatagccatcatccgagtctcaggg |
90 |
Q |
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||||||||| ||| |||||||||||||| ||||||||| ||| |||||||| |||||||||||| |||| ||||||| |
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| T |
56209218 |
aaatactctcgaattagaaaatggactgttggaatatcaaagggtaaagaactaatagccatcattcgagcctcaggg |
56209141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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