View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14009_low_2 (Length: 781)
Name: NF14009_low_2
Description: NF14009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14009_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 11 - 485
Target Start/End: Complemental strand, 49981470 - 49980989
Alignment:
| Q |
11 |
tagataatactcacatcgtccaactaagttatgtgattttgggttggtgcatagtgacgtagacataatacgttgatatacaatacaacatatgatgtgt |
110 |
Q |
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| T |
49981470 |
tagataagactcacatcgtccgactaagttatgtgattttgggttggtgcatagtgacgtagacgtaatacgttgatatacaatacaacatatgatgtgt |
49981371 |
T |
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| Q |
111 |
aaaatataagcccagatagattgtgaattttataatccaaaaaacattaaaaacgcttcaaattatgattcaagtggggataaaatagacgaaaccgagg |
210 |
Q |
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| T |
49981370 |
aaaatataagcccagatagattgtgaattttataatccaaaaaacattaaaaatgcttcaaattatgattcaaatggggataaaatagacgaaaccgagg |
49981271 |
T |
|
| Q |
211 |
acgggcgcgagaag-------gtcgggaaaagaaattctttatattcatcccaaaacaaattgaannnnnnncactttagtctcggcactatgttattgt |
303 |
Q |
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| T |
49981270 |
acgggcgcgagaagggtggatggtgggaaaataaattctttacattcatccccaaacaaattgaattcttttcactttagtctcggcactatgttattgt |
49981171 |
T |
|
| Q |
304 |
ttctaagatgggtctagagtttatttttaattttgtaacctatatgaagcatgannnnnnnaggggatgtagcattattaattcttaagtattaaaagag |
403 |
Q |
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| T |
49981170 |
ttctaagatgggtctagagtttatttttaattttgtaacctatatgaagcatgaattttttaggggatgtagcattactaattcttaagtattaaaagag |
49981071 |
T |
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| Q |
404 |
taaaatacataattgaaagtccgtaactgtggttcatgtgttaaacaaatgattgcacttcacattggcccattcaattgtg |
485 |
Q |
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| T |
49981070 |
taaaatacataattgaaagtccttaactctggttcatgtgttaaacaaatgattgcacttcacattggcccattcaattgtg |
49980989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 557 - 739
Target Start/End: Complemental strand, 49980917 - 49980737
Alignment:
| Q |
557 |
ttggaacatcatgaatcacataatttgaaacggaaggaaccaattgttggtctagagttgatatcaggagttttatttcttcgaaattactagtaattta |
656 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49980917 |
ttggaacatcatgaatca--taatttgaaacggaaggaaccaattgttggtctagagttgatatcaggagttttatttcttcgaaattactagtaattta |
49980820 |
T |
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| Q |
657 |
gttaaatttgattgtgtggtctatttgaaagtccctaaatggatctattttctttggaaagatagtaattgttgagcaactta |
739 |
Q |
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| T |
49980819 |
gttaaatttgattgtgtggtctatttgaaggttcccaaatggatctattttctttgaaaagatagtaattgttcagcaactta |
49980737 |
T |
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