View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14009_low_4 (Length: 578)
Name: NF14009_low_4
Description: NF14009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14009_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 3e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 424 - 563
Target Start/End: Original strand, 51710649 - 51710788
Alignment:
| Q |
424 |
tttaactacaaagctttacactattcttggcagtaatacgaattaacaaaatgaataaattcaattcattaatcttcagaatgctgttatatacacaagc |
523 |
Q |
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| T |
51710649 |
tttaactacaaagctttacactattcttggcagtaatacgaattaacaaaatgaataaattcaattcattaatcttcagaatgctgttatgtacacaagc |
51710748 |
T |
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| Q |
524 |
taactctaattatttttctaacaaacttaacagaataaac |
563 |
Q |
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| T |
51710749 |
taactctaattatttttctaacaaacttaacagattaaac |
51710788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 51710582 - 51710626
Alignment:
| Q |
138 |
gtattttagtgagcatttgaatttcaaaatatttgagtttgccgc |
182 |
Q |
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| T |
51710582 |
gtattttagtgagcatttgaatttcaaaaaatttgagtttgccgc |
51710626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 138 - 205
Target Start/End: Original strand, 32987642 - 32987709
Alignment:
| Q |
138 |
gtattttagtgagcatttgaatttcaaaatatttgagtttgccg-ctaagccatgagagctaaaattgg |
205 |
Q |
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| T |
32987642 |
gtattttagtgaggatttgaatttcaaaa-aattgagtttgccgcctaaaccatgagagctaaatttgg |
32987709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 161 - 200
Target Start/End: Original strand, 30716916 - 30716955
Alignment:
| Q |
161 |
tcaaaatatttgagtttgccgctaagccatgagagctaaa |
200 |
Q |
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| T |
30716916 |
tcaaaaaatttgagtttgccgctaagccatgagagctaaa |
30716955 |
T |
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