View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14009_low_6 (Length: 562)
Name: NF14009_low_6
Description: NF14009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14009_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 1 - 547
Target Start/End: Original strand, 45683938 - 45684486
Alignment:
| Q |
1 |
taaacaagttggttttgcatctgaataaattaggatagaacatgcatatttgaccctcactgcgacctttttctgaaaattaccaaa-ccgaagggtata |
99 |
Q |
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| T |
45683938 |
taaacaagttggttttgcatctgaataaattaggatagaacatgcatatttgaccctcactgcgacctttttctgaaaattaccaaaaccgaagggtata |
45684037 |
T |
|
| Q |
100 |
tgtaattctagtatatgtaatgagtctggctttttcaataatgaatttccaaacctgatgttttgattctaaaacagatgcaagttgtagatttaaagag |
199 |
Q |
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| T |
45684038 |
tgtaattctagtatatgtaatgagtctggctttttcaataatgaattaccaaacctgatgttttgattctaaaacagatgcaagttgtagatttaaagag |
45684137 |
T |
|
| Q |
200 |
caccgaagggcccactatgatgaattccttcaagttaaagaactgagaaagcaggctgctcttctagagaatggaagtgacaaggagaataatcgtaata |
299 |
Q |
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| T |
45684138 |
caccgaagggcccactatgatgaattccttcaagttaaagaactgagaaagcaggctgctcttctagagaatggaagtgacaaggagaataatcgtaata |
45684237 |
T |
|
| Q |
300 |
ccgtgcttgctgaggagaagaaatccgactcatcttctccagtgagtgctaagtaaaggagattgacatc-gggggaaatggcttctgttcaattcctcc |
398 |
Q |
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| T |
45684238 |
ccgtgcttgctgaggagaagaaatccgactcatcttctccagtgagtgctaagtaaaggagattgacatcggggggaaatggcttctgttcaattcctcc |
45684337 |
T |
|
| Q |
399 |
aactaagtgtttactaaatactgtttgatgaataaaacccacttgatggtttcattactttttgtatttatggaaaggaaatagctgaccgtttaactga |
498 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
45684338 |
aactaagtgtttattaaatactgtttgatgaataaaacccacttggtggtttcattactttttgtatttatggaaaggaaatagctgaccaattaactga |
45684437 |
T |
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| Q |
499 |
tttattgtgtcattcatgtataaaaagcttctttttccacttggtatgt |
547 |
Q |
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| T |
45684438 |
tttattgtgtcattcatgtataaaaagcttctttttccacttggtatgt |
45684486 |
T |
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