View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14009_low_7 (Length: 468)
Name: NF14009_low_7
Description: NF14009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14009_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 35009380 - 35009722
Alignment:
| Q |
1 |
gaaggttaatgagagagagtcattaagagcaagaccattgtcaaacgaagctctaaatttagtcatgaaatctgcacattggttcccctactgaaagtgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| ||| ||| || | |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
35009380 |
gaaggttaatgagagagagtcattaagagcaagaccatcgtcaaatgaatctccaagctaagtcatgaaatctgcacattggttcccctactaaaagtgt |
35009479 |
T |
|
| Q |
101 |
gagaaatcgtaatattactttaaagaagcaattgttttatgttctgaacgaggatcacatatgcatggtatttttcaacatgaccattcaaaagattgat |
200 |
Q |
| |
|
|||||| |||||||||||||| ||||| |||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||| |||| |||||| |
|
|
| T |
35009480 |
gagaaaccgtaatattactttgaagaaacaattgttttatgttctgaatgaggatcgcatatgcatggtatctttcaacatgaccatttaaaaaattgat |
35009579 |
T |
|
| Q |
201 |
gcaaacaagagaatcgaaataacaagctaactccgtgtaacccaaatcccttgccatgactagaccatgataattttggaggatactttaaacaagagaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
35009580 |
gcaaacaagagaatcgaaataacaagctaactccgtataacccaaatcccttgccatgactaaaccacgataattttggacgatactttaaacaagagaa |
35009679 |
T |
|
| Q |
301 |
ttacttttaccgtcctcttttagtgtgtttttgattatgtcatg |
344 |
Q |
| |
|
||||||||||||||| |||||||||||| || |||||||||||| |
|
|
| T |
35009680 |
ttacttttaccgtcc-cttttagtgtgtgttcgattatgtcatg |
35009722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 247
Target Start/End: Complemental strand, 36186327 - 36186098
Alignment:
| Q |
17 |
gagtcattaagagcaagaccattgtcaaacgaagctctaaatttagtcatgaaatctgcacattggttcccctact-gaaagtgtgagaaatcgtaatat |
115 |
Q |
| |
|
||||||| |||| |||||||||| ||||| ||| |||||| ||| | |||||||||||| | ||||||| | | || ||||||||||| ||||||| |
|
|
| T |
36186327 |
gagtcatgaagaacaagaccattatcaaatgaaactctaagtttcgccatgaaatctgcgaaccggttcccttttttgagagtgtgagaaactgtaatat |
36186228 |
T |
|
| Q |
116 |
tactttaaagaagcaattgttttatgttctgaacgaggatcacatatgcatggtatttttcaacatgaccattcaaaagattgatgcaaacaagagaatc |
215 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||| |||| | |||| |||| ||| | |||| ||| ||||| | |||||||| | || |||||||||| |
|
|
| T |
36186227 |
tactttgaagaagcaattg-tttatgttctgaagaaggaccgcataaacatgatatctctcaatatg-ccattaagaagattgacgtaagcaagagaatc |
36186130 |
T |
|
| Q |
216 |
gaaataacaagctaactccgtgtaacccaaat |
247 |
Q |
| |
|
|||||||| ||| |||| | |||||||||| |
|
|
| T |
36186129 |
agaataacaacctagctccatataacccaaat |
36186098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 400 - 452
Target Start/End: Original strand, 35009770 - 35009822
Alignment:
| Q |
400 |
agttgaatataaaatggtttatgttctgatgatgatgataaatgtcaattttc |
452 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
35009770 |
agttgaatataaaatggtttatgtttcgatgatgatgataaatgtcaattttc |
35009822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 135
Target Start/End: Original strand, 19109462 - 19109530
Alignment:
| Q |
68 |
aaatctgcacattggttccccta-ctgaaagtgtgagaaatcgtaatattactttaaagaagcaattgt |
135 |
Q |
| |
|
|||||| | ||||||||||||| |||| ||||||||||| | |||||||||||| ||||||||||||| |
|
|
| T |
19109462 |
aaatctacgcattggttcccctctctgagagtgtgagaaaccataatattactttgaagaagcaattgt |
19109530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 92 - 249
Target Start/End: Original strand, 36185580 - 36185735
Alignment:
| Q |
92 |
tgaaagtgtgagaaatcgtaatattactttaaagaagcaattgttttatgttctgaacgaggatcacatatgcatggtatttttcaacatgaccattcaa |
191 |
Q |
| |
|
||||| ||||||||| | |||||||||||| ||||||||||||||||||||| |||| || | | |||| |||||||| | |||| | ||||| | |
|
|
| T |
36185580 |
tgaaactgtgagaaaccttaatattactttgaagaagcaattgttttatgttttgaagaagaaccgcataaacatggtatct--caacggggccattaag |
36185677 |
T |
|
| Q |
192 |
aagattgatgcaaacaagagaatcgaaataacaagctaactccgtgtaacccaaatcc |
249 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
36185678 |
aagatatatgcaaacaagagaatcataataacaagctaactccgtataacccaaatcc |
36185735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 131
Target Start/End: Complemental strand, 5903604 - 5903569
Alignment:
| Q |
96 |
agtgtgagaaatcgtaatattactttaaagaagcaa |
131 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5903604 |
agtgtgagaaatcgtaatattattttaaagaagcaa |
5903569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 273
Target Start/End: Complemental strand, 21377666 - 21377598
Alignment:
| Q |
205 |
acaagagaatcgaaataacaagctaactccgtgtaacccaaatcccttgccatgactagaccatgataa |
273 |
Q |
| |
|
||||||||||| ||||||||||||| || | ||||||||||| | |||||||| |||||||||||| |
|
|
| T |
21377666 |
acaagagaatcaaaataacaagctagttctgaataacccaaatcattagccatgaccagaccatgataa |
21377598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University