View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1400_low_1 (Length: 499)
Name: NF1400_low_1
Description: NF1400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1400_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 2 - 299
Target Start/End: Complemental strand, 32812050 - 32811759
Alignment:
| Q |
2 |
ggatgtccaagaatatccaataatatttaattttgtacgatttaagtttatttgcggttttagtttgataagtttgaatataaacacttctataaaaact |
101 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
32812050 |
ggatgtccaaacatatccaataatatttaattttgtactattaaagtttatttgctgttttagtttgatcagtttgaatataaacactcctataaaaact |
32811951 |
T |
|
| Q |
102 |
atgttcattatttcctcaaatgcatcatctctaactatcattttatcttttcttcatcacacgttgactcacttgaaaaacatatcatcnnnnnnnnnnn |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
32811950 |
atgttcattatttcctcaaatgcatcatctctaactatcattttatcttttcttcatcacacgttgactcacttgaaaaacctatcat------tttttt |
32811857 |
T |
|
| Q |
202 |
nnnnnattaccatgttattctcatgaagtttccaccgtcgtttatcgatgatcaatcttcattaaagaatctatgcggcacacaaaatatattcttcc |
299 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32811856 |
ttattattaccatgttatcctcatgaagtttccaccgtcgtttatcgatgaccaatcttcattaaagaatctatgcggcacacaaaatatattcttcc |
32811759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 288 - 499
Target Start/End: Complemental strand, 32811738 - 32811527
Alignment:
| Q |
288 |
atatattcttccctttcaacttgattgtttccatacacaagagttaagaatcaaatttatgaccacttacttaaatcacctaaattatttaccccttgca |
387 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32811738 |
atatattcttccctttcaaccggattgtttccatacgcaagagttaagaatcaaatttatgaccacttacttaaatcacctaaattatttaccccttgca |
32811639 |
T |
|
| Q |
388 |
ctgttgcacaaatgcgtgttcatataacgatcttaacactgcctctaaaatagtgaagaaaatttcacataccaatgagatttgctactttatccgtaca |
487 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32811638 |
ctgttgcacaaatgcttgttcatataacgatattaacactgcctctaaaatagtgaagaaaatttcacataccaatgagatttgctactttatccgtaca |
32811539 |
T |
|
| Q |
488 |
agcacatctttc |
499 |
Q |
| |
|
|||||||||||| |
|
|
| T |
32811538 |
agcacatctttc |
32811527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 100 - 161
Target Start/End: Complemental strand, 3719253 - 3719192
Alignment:
| Q |
100 |
ctatgttcattatttcctcaaatgcatcatctctaactatcattttatcttttcttcatcac |
161 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||| |||||| |||||| |||| ||||| |||| |
|
|
| T |
3719253 |
ctattttcattatttcctaaaatgcatcatctgtaactagcattttttcttctcttcgtcac |
3719192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 162
Target Start/End: Original strand, 27794250 - 27794307
Alignment:
| Q |
105 |
ttcattatttcctcaaatgcatcatctctaactatcattttatcttttcttcatcaca |
162 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||| ||| ||||| ||| ||||||| |
|
|
| T |
27794250 |
ttcattatttccagaaatgcatcatctctagctatcttttcatcttctctccatcaca |
27794307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 27202480 - 27202416
Alignment:
| Q |
98 |
aactatgttcattatttcctcaaatgcatcatctctaactatcattttatcttttcttcatcaca |
162 |
Q |
| |
|
|||||| |||||||||||| |||||||||||| ||| ||| || |||||| | ||||||||||| |
|
|
| T |
27202480 |
aactattttcattatttccataaatgcatcatccctatctagcaatttatcgtctcttcatcaca |
27202416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University