View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1400_low_10 (Length: 245)
Name: NF1400_low_10
Description: NF1400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1400_low_10 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 24 - 245
Target Start/End: Original strand, 55202410 - 55202631
Alignment:
| Q |
24 |
cctataaagctcaccaaatttcaaatatgcatgcaataatgttatttaactagacaaagtgcaatgattttgtttgtgagacagaataaatagcctccac |
123 |
Q |
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| T |
55202410 |
cctataaagctcaccaaatttcaaatatgcatgcaataatgttatttaactagacaaagtgcaatgattttgtttgtgtgacagaatgaatagcctccac |
55202509 |
T |
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| Q |
124 |
cagcatcttcctatacttcttcttttgatgctccccactcttagttttaacaacctccttctcaagcatcacaataacctcatgaatattctcaggagtt |
223 |
Q |
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| T |
55202510 |
cagcatcttcctatacttcttcttcagatgctccccagtcttagttttaacaacctccttctcaagcatcacaacaacctcatgaatattctcaggagtt |
55202609 |
T |
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| Q |
224 |
acaagttcaagagcaacatcaa |
245 |
Q |
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|||||||||||||||||||||| |
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| T |
55202610 |
acaagttcaagagcaacatcaa |
55202631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 245
Target Start/End: Complemental strand, 1472202 - 1472108
Alignment:
| Q |
151 |
atgctccccactcttagttttaacaacctccttctcaagcatcacaataacctcatgaatattctcaggagttacaagttcaagagcaacatcaa |
245 |
Q |
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||||||||| |||| || |||||||||||||||| |||||||| || ||||| || |||||||| || || | ||| |||||||||| ||||| |
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| T |
1472202 |
atgctccccgctctgcgtcttaacaacctccttcttaagcatcataacaacctgatcaatattcttcggcgtaataagctcaagagcaatatcaa |
1472108 |
T |
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