View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1400_low_3 (Length: 447)
Name: NF1400_low_3
Description: NF1400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1400_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 136; Significance: 9e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 132 - 274
Target Start/End: Original strand, 48168706 - 48168849
Alignment:
| Q |
132 |
aataatattatgatatacaattagattgaactgaatagtgaataacctgtttgattgtcctaatatatagatctctacccatctcctggtacatggata- |
230 |
Q |
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| T |
48168706 |
aataatattatgatatacaattagattgaactgaatagtgaataacctgtttgattgtcctaatatatagatctctacccatctcctggtacatggatat |
48168805 |
T |
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| Q |
231 |
gcatgttcgtaagaaactcttgtattttcttataataatataaa |
274 |
Q |
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| T |
48168806 |
gcatgttcgtaagaaactcttgtattttcttataataatataaa |
48168849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 266 - 369
Target Start/End: Original strand, 48170317 - 48170420
Alignment:
| Q |
266 |
taatataaactagagagaatgacagtagaatagaaaggcaaggcaactttctgcacgcaaaacagaacaacatctaccaaaaaacgaagatcaagcccat |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48170317 |
taatataaactagagagaatgacagtagaatagaaaggcaaggcaactttctgcacgcaaaacagaacaacatctaccaaaaaacgaagatcaagcccat |
48170416 |
T |
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| Q |
366 |
aatt |
369 |
Q |
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|||| |
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| T |
48170417 |
aatt |
48170420 |
T |
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