View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1400_low_4 (Length: 420)
Name: NF1400_low_4
Description: NF1400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1400_low_4 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 30 - 420
Target Start/End: Complemental strand, 34374850 - 34374460
Alignment:
| Q |
30 |
catatgactttttcctttcttcatcttcatttcaaaattagaaggtatatgatcctctggtgctcgtgttattgatacttcctgttaatacaagaaatat |
129 |
Q |
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| T |
34374850 |
catatgactttttcctttcttcatcttcatttcaaaactagaaggtatatgatcctctggtgctcgtgttattgatacttcctgttaatacaagaaatat |
34374751 |
T |
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| Q |
130 |
tatcaatatcttctgaatattatatcaaagactacatgcataacggtgaaaaatacatgtcatgaaattgattattaccttgttaattctcttatttgcg |
229 |
Q |
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| T |
34374750 |
tatcaatatcttctgaatattatatcaaagactacatgcataacggtgaaaaatacatgtcatgaaattgattattaccttgttaattctcttatttgcg |
34374651 |
T |
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| Q |
230 |
tttcctttatgaaagaatttggacagaaaacgagtacaccctgcaggggggcaagttgacgagcttgagttgtttacttcaatattatcatcttctttat |
329 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
34374650 |
tttcctttatgaaagaatttggacagaaaaggagtacaccctgcaggggggcaagttgacgagtttgagttgtttacttcaatattatcatcttctttat |
34374551 |
T |
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| Q |
330 |
tttttgaatgtgtgacattgttgaggctgtcttgatttgcatggatatatgttggtgatagagatatcttcaacattggacaataatcaat |
420 |
Q |
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| T |
34374550 |
tttttgaatgtgtgacattgttgaggctgtcttgatttgcatggatatatgttggtgatagagatatcttcaacattggacaatcatcaat |
34374460 |
T |
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