View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1400_low_7 (Length: 318)
Name: NF1400_low_7
Description: NF1400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1400_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 44 - 292
Target Start/End: Original strand, 38668688 - 38668936
Alignment:
| Q |
44 |
ctaatttcttctttgtaaagcttcctaagtttcaattaatttaaaggcatatatgcgcagcttaattagggatgagtaggatctcctcctcctgatccag |
143 |
Q |
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| T |
38668688 |
ctaatttcttatttgtaaagcttcctaagtttcaattaatttgaaggcatatatgtgcagcttaattagggatgagtaggatctcctcctcttgatccag |
38668787 |
T |
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| Q |
144 |
gtgcattaccatttggaagtgattgcaaaataagtccatgatcccaagaccattgataataattcaatgacaatggcctgcaatctactcctcctgattg |
243 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38668788 |
gtgctttaccatttggaagtgattgcaaaataagtccatgatcccaagaccattgataataattcaatgacaatggcctgcaatctactcctcctgattg |
38668887 |
T |
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| Q |
244 |
aggtgtaacgaatatgttgaagatgattagtacatagagaagaactttg |
292 |
Q |
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| T |
38668888 |
aggtgtaacgaatatgttgaagatgattagtacatagagaagaactttg |
38668936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 48 - 292
Target Start/End: Complemental strand, 38666983 - 38666735
Alignment:
| Q |
48 |
tttcttctttgtaaagcttcctaa----gtttcaattaatttaaaggcatatatgcgcagcttaattagggatgagtaggatctcctcctcctgatccag |
143 |
Q |
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| T |
38666983 |
tttcttctttgtaaagcttcctaattaagttccaattaatttgaatgcatatatgtgcagcttaattagggatgagtaggatctcctcctcctgatccag |
38666884 |
T |
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| Q |
144 |
gtgcattaccatttggaagtgattgcaaaataagtccatgatcccaagaccattgataataattcaatgacaatggcctgcaatctactcctcctgattg |
243 |
Q |
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| T |
38666883 |
gtgcattaccatttggaagtgattgcaaaataagtccatgatcccaagaccattgataataattcaatgacaatggcctgcaatctactcctcctgattg |
38666784 |
T |
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| Q |
244 |
aggtgtaacgaatatgttgaagatgattagtacatagagaagaactttg |
292 |
Q |
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| T |
38666783 |
aggtgtaacgaatatgttgaagatgattagtacatagagaagaactttg |
38666735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 105 - 292
Target Start/End: Complemental strand, 38674673 - 38674486
Alignment:
| Q |
105 |
ttaattagggatgagtaggatctcctcctcctgatccaggtgcattaccatttggaagtgattgcaaaataagtccatgatcccaagaccattgataata |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38674673 |
ttaattagggatgagtaggatctcctcctcctgatccaggtgcattaccatttggaagtgattgcaaaataagtccatgatcccaagaccattgataata |
38674574 |
T |
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| Q |
205 |
attcaatgacaatggcctgcaatctactcctcctgattgaggtgtaacgaatatgttgaagatgattagtacatagagaagaactttg |
292 |
Q |
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| T |
38674573 |
attcaatgacaatggcctgcaatctactcctcctgattgaggtgtaacgaatatgttgaagatgattagtacatagagaagaactttg |
38674486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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