View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1400_low_9 (Length: 251)
Name: NF1400_low_9
Description: NF1400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1400_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 4 - 197
Target Start/End: Original strand, 55202639 - 55202834
Alignment:
| Q |
4 |
ccttctaacaacatagttacgagcctttgaaagcgccctaagcacatccataaccatatcaaccatattttccctattaagctcattcaaacgatcaagc |
103 |
Q |
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| T |
55202639 |
ccttccaacaacatagttacgagccttcgaaaacgccctaagcacatccataaccatatcaaccataatttccctattaagctcattcaaacgatcaagc |
55202738 |
T |
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| Q |
104 |
acaatgag--tttcacattgttatcactcttggaagaaagtaataactgacaataagtagtagcagcaactttaattgcattaggtgtagaactaa |
197 |
Q |
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| T |
55202739 |
acaatgagtttttcacattgttatcactcttggaagaaagtaataactgacaataagtagtggcagtaactttaattgcattaggtgtagaactaa |
55202834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 37 - 238
Target Start/End: Complemental strand, 1472070 - 1471863
Alignment:
| Q |
37 |
cgccctaagcacatccataaccatatcaaccatattttccctatta---------agctcattcaaacgatcaagcacaatgagtttcacattgttatca |
127 |
Q |
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| T |
1472070 |
cgccctaagcacatccataaccatatcaaccataatctccctattatccctcttaagctcgttaagccgatcaagcacaataagcttcacattgttatca |
1471971 |
T |
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| Q |
128 |
ctcttggaagaaagtaataactgacaataagtagtagcagcaactttaattgcattaggtgtagaactaaccaaaacaagtgtaccagcacattcataaa |
227 |
Q |
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| T |
1471970 |
ctctg---agaaagcaataactgacaataagtattcgcagccgctttaatcgcggttggtgcagaactaagcgaaacaagcgtaccagcacattcataaa |
1471874 |
T |
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| Q |
228 |
caacagaagta |
238 |
Q |
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|||||| |||| |
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| T |
1471873 |
caacagcagta |
1471863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 33 - 233
Target Start/End: Complemental strand, 46467160 - 46466957
Alignment:
| Q |
33 |
aaagcgccctaagcacatccataaccatatcaaccatattttcccta---------ttaagctcattcaaacgatcaagcacaatgagtttcacattgtt |
123 |
Q |
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|||| ||||||||||||||||||||||||||||||||| | |||||| |||||||| || | ||||||||||||||| |||||||||||||| |
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| T |
46467160 |
aaagtgccctaagcacatccataaccatatcaaccataatctccctattatacctcttaagctcgttaagacgatcaagcacaataagtttcacattgtt |
46467061 |
T |
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| Q |
124 |
atcactcttggaagaaagtaataactgacaataagtagtagcagcaactttaattgcattaggtgtagaactaaccaaaacaagtgtaccagcacattca |
223 |
Q |
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| T |
46467060 |
atcactat---gagaaatcaacaacttacaataagcactagcagcagcttcaattgcagtaggtgcag---taagtgaaacaagtgcaccagcacattca |
46466967 |
T |
|
| Q |
224 |
taaacaacag |
233 |
Q |
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|||||||||| |
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| T |
46466966 |
taaacaacag |
46466957 |
T |
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