View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14010_high_1 (Length: 668)

Name: NF14010_high_1
Description: NF14010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14010_high_1
NF14010_high_1
[»] chr8 (18 HSPs)
chr8 (312-651)||(31673697-31674039)
chr8 (13-233)||(31673411-31673619)
chr8 (374-455)||(24962224-24962305)
chr8 (374-456)||(43980441-43980523)
chr8 (377-427)||(5969827-5969876)
chr8 (377-427)||(13486974-13487023)
chr8 (377-427)||(31008359-31008408)
chr8 (379-425)||(37956285-37956331)
chr8 (377-427)||(41726182-41726231)
chr8 (377-430)||(3656087-3656139)
chr8 (377-426)||(27679099-27679147)
chr8 (374-426)||(57076-57128)
chr8 (308-360)||(12762939-12762990)
chr8 (312-360)||(14522302-14522349)
chr8 (374-426)||(14739600-14739652)
chr8 (308-360)||(40517837-40517888)
chr8 (374-430)||(40601924-40601980)
chr8 (308-360)||(45203855-45203906)
[»] chr1 (25 HSPs)
chr1 (308-456)||(51997051-51997203)
chr1 (308-358)||(4817864-4817913)
chr1 (308-358)||(4829664-4829713)
chr1 (308-425)||(46495405-46495525)
chr1 (374-428)||(24415154-24415208)
chr1 (308-358)||(44335388-44335438)
chr1 (380-426)||(44395709-44395755)
chr1 (181-233)||(10842297-10842350)
chr1 (177-233)||(31305282-31305339)
chr1 (308-357)||(47643636-47643684)
chr1 (371-427)||(5321907-5321963)
chr1 (371-427)||(25063374-25063430)
chr1 (374-457)||(15512636-15512719)
chr1 (374-457)||(28948819-28948902)
chr1 (377-427)||(9293852-9293901)
chr1 (380-430)||(9684598-9684648)
chr1 (377-455)||(12844000-12844078)
chr1 (377-427)||(44258000-44258049)
chr1 (181-233)||(4813544-4813597)
chr1 (374-427)||(5084974-5085027)
chr1 (311-359)||(15911509-15911556)
chr1 (308-360)||(34012583-34012634)
chr1 (374-430)||(34696765-34696821)
chr1 (310-346)||(46591200-46591235)
chr1 (308-360)||(51390493-51390544)
[»] chr7 (13 HSPs)
chr7 (310-455)||(20123549-20123692)
chr7 (379-430)||(36858365-36858415)
chr7 (377-455)||(25098244-25098322)
chr7 (377-427)||(29983465-29983514)
chr7 (374-455)||(5333757-5333838)
chr7 (325-358)||(33181408-33181441)
chr7 (308-360)||(1324805-1324856)
chr7 (379-427)||(2276465-2276513)
chr7 (308-360)||(2276534-2276585)
chr7 (374-426)||(10685250-10685302)
chr7 (176-235)||(20123414-20123474)
chr7 (308-360)||(42983571-42983622)
chr7 (379-431)||(47458069-47458121)
[»] chr2 (14 HSPs)
chr2 (310-360)||(11459252-11459301)
chr2 (380-429)||(11459326-11459375)
chr2 (377-430)||(24128983-24129035)
chr2 (374-430)||(534631-534687)
chr2 (374-430)||(3237881-3237937)
chr2 (374-425)||(7278501-7278552)
chr2 (177-235)||(28265032-28265091)
chr2 (374-455)||(17663790-17663871)
chr2 (374-455)||(20362148-20362229)
chr2 (374-427)||(27749633-27749686)
chr2 (371-427)||(3645482-3645538)
chr2 (374-430)||(4033992-4034048)
chr2 (308-360)||(14420773-14420824)
chr2 (374-430)||(44424759-44424815)
[»] chr6 (7 HSPs)
chr6 (308-360)||(1763910-1763961)
chr6 (382-455)||(22410701-22410774)
chr6 (308-359)||(3729519-3729569)
chr6 (374-456)||(19839097-19839179)
chr6 (377-427)||(24068021-24068070)
chr6 (308-360)||(30248959-30249010)
chr6 (372-412)||(31481878-31481918)
[»] chr4 (26 HSPs)
chr4 (374-437)||(22651630-22651693)
chr4 (371-429)||(51787933-51787991)
chr4 (374-455)||(12624862-12624943)
chr4 (177-233)||(13096625-13096681)
chr4 (374-426)||(31917541-31917593)
chr4 (177-235)||(20293708-20293767)
chr4 (374-425)||(30050151-30050202)
chr4 (371-430)||(38136513-38136572)
chr4 (380-427)||(46729477-46729524)
chr4 (377-427)||(11792604-11792653)
chr4 (377-427)||(11861271-11861320)
chr4 (377-427)||(23611361-23611410)
chr4 (371-437)||(26203294-26203360)
chr4 (374-448)||(52676187-52676261)
chr4 (181-233)||(14602738-14602791)
chr4 (371-427)||(20792154-20792210)
chr4 (178-233)||(722358-722414)
chr4 (423-455)||(5448622-5448654)
chr4 (207-235)||(5932882-5932910)
chr4 (308-360)||(10602167-10602218)
chr4 (308-360)||(30153180-30153230)
chr4 (308-360)||(37625082-37625133)
chr4 (177-232)||(39414201-39414257)
chr4 (308-360)||(41945730-41945781)
chr4 (371-427)||(52552398-52552454)
chr4 (308-348)||(52676117-52676157)
[»] chr5 (17 HSPs)
chr5 (308-358)||(10934103-10934152)
chr5 (310-360)||(27587937-27587986)
chr5 (181-233)||(14044580-14044633)
chr5 (371-424)||(18032758-18032811)
chr5 (308-360)||(5845273-5845324)
chr5 (380-428)||(34877838-34877886)
chr5 (374-457)||(39690341-39690424)
chr5 (377-427)||(8760928-8760977)
chr5 (377-426)||(6514306-6514354)
chr5 (311-360)||(15898419-15898467)
chr5 (374-427)||(21912286-21912339)
chr5 (374-427)||(27925439-27925492)
chr5 (374-430)||(3631000-3631056)
chr5 (308-360)||(29866286-29866337)
chr5 (371-427)||(30317907-30317963)
chr5 (371-427)||(30347968-30348024)
chr5 (374-430)||(36177459-36177515)
[»] chr3 (14 HSPs)
chr3 (380-430)||(26999214-26999264)
chr3 (377-430)||(33987058-33987110)
chr3 (374-426)||(12077630-12077682)
chr3 (308-360)||(31531087-31531138)
chr3 (308-348)||(46435702-46435742)
chr3 (377-427)||(11676084-11676133)
chr3 (377-427)||(30464910-30464959)
chr3 (371-429)||(33411862-33411920)
chr3 (377-427)||(33635113-33635162)
chr3 (377-427)||(37599710-37599759)
chr3 (374-430)||(13084245-13084301)
chr3 (379-427)||(14645777-14645825)
chr3 (308-360)||(26517174-26517225)
chr3 (308-360)||(50363123-50363174)
[»] scaffold0070 (1 HSPs)
scaffold0070 (377-427)||(12951-13000)
[»] scaffold0005 (1 HSPs)
scaffold0005 (181-233)||(214587-214640)


Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 312 - 651
Target Start/End: Original strand, 31673697 - 31674039
Alignment:
Q  312 ttcaaatttcaatgacaagttagtaatattaattaagagtatgtttaggnnnnnnnnnnt----gtatcttgtaatttaaaaagggatttacattgaagg 407  Q
    ||||||||||||||||| ||||||| ||||||||||| |||||||||||          |    |||||||||||||| |||| || |||||||||||||    
T  31673697 ttcaaatttcaatgacaggttagtagtattaattaagggtatgtttaggaaaagaataataaatgtatcttgtaatttgaaaaagggtttacattgaagg 31673796  T
Q  408 ataaaaataaaatcaaatggatgactacattaagggacggagcgagtataaaagagtatgttgccaaagtcaaagttgtagcaattaattaacaaattat 507  Q
    |||||| |||||||||||  ||| ||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31673797 ataaaagtaaaatcaaattaatggctac------ggacggagcgagtataaaagagtatgttgccaaagtcaaagttgtagcaattaattaacaaattat 31673890  T
Q  508 taagcttaactagtcactactacgta----ataggaatttttgg-cttatatgccgtcccacgaatagacatgcaagtatgagtatatgctatgtaagat 602  Q
    ||||||||||||||||||||||||||    ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31673891 taagcttaactagtcactactacgtacgtaatagggatttttgggcttatatgccgtcccacgaatagacatgcaagtatgagtatatgctatgtaagat 31673990  T
Q  603 taaccccaagtgatctaaaaatgaaatcatagaatttgtagtttaattt 651  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31673991 taaccccaagtgatctaaaaatgaaatcatagaatttgtagtttaattt 31674039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 13 - 233
Target Start/End: Original strand, 31673411 - 31673619
Alignment:
Q  13 attatactcaaatcaatatatgttgggtttgtttgatttagtttgatttggacccttatttagaaggttatccggcatggcgtctactcaattttgtaag 112  Q
    |||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31673411 attatactcaaatcaatatatgttgggtt----------agtttgatttggacccttatttagaaggttatccggcatggcgtctactcaattttgtaag 31673500  T
Q  113 catcctcaaatatagattactctctgataatgtttccacgttgtactatatgattatacttcctcctccgtccctatatataaatctcttttactttttt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||  |||||||||| || ||||||||||||    
T  31673501 catcctcaaatatagattactctctgataatgtttccacgttgtactatatgattatact---tcctccgtctttatatataaacctgttttactttttt 31673597  T
Q  213 caca-tttttaagaaaagttgt 233  Q
    |||| |||||||||||||||||    
T  31673598 cacattttttaagaaaagttgt 31673619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 374 - 455
Target Start/End: Complemental strand, 24962305 - 24962224
Alignment:
Q  374 atcttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatggatgactacattaagggacggagcgagta 455  Q
    |||| ||||||| ||||||  |||||||| ||||| ||||||||||||||||||||| ||||||  |||||||||| |||||    
T  24962305 atctagtaatttgaaaaggagtttacatttaaggacaaaaataaaatcaaatggatgcctacatatagggacggagggagta 24962224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 456
Target Start/End: Complemental strand, 43980523 - 43980441
Alignment:
Q  374 atcttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatggatgactacattaagggacggagcgagtat 456  Q
    |||| ||||||| ||||||  |||||||| ||||| |||||||||||||||||| ||  |||||  |||||||||| ||||||    
T  43980523 atctagtaatttgaaaaggagtttacatttaaggacaaaaataaaatcaaatgggtgcttacatatagggacggagggagtat 43980441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 427
Target Start/End: Complemental strand, 5969876 - 5969827
Alignment:
Q  377 ttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatgg 427  Q
    |||||||||||||| || |||||||| ||||| ||||||||||||||||||    
T  5969876 ttgtaatttaaaaaagg-tttacatttaaggacaaaaataaaatcaaatgg 5969827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 427
Target Start/End: Complemental strand, 13487023 - 13486974
Alignment:
Q  377 ttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatgg 427  Q
    ||||||||||||||   ||||||||| ||||||||||||||||||||||||    
T  13487023 ttgtaatttaaaaaat-atttacatttaaggataaaaataaaatcaaatgg 13486974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 427
Target Start/End: Complemental strand, 31008408 - 31008359
Alignment:
Q  377 ttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatgg 427  Q
    |||||||||||||| || |||||||| ||||| ||||||||||||||||||    
T  31008408 ttgtaatttaaaaaagg-tttacatttaaggacaaaaataaaatcaaatgg 31008359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 379 - 425
Target Start/End: Original strand, 37956285 - 37956331
Alignment:
Q  379 gtaatttaaaaagggatttacattgaaggataaaaataaaatcaaat 425  Q
    ||||||||||||||| |||||||| | ||| ||||||||||||||||    
T  37956285 gtaatttaaaaaggggtttacatttagggacaaaaataaaatcaaat 37956331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 427
Target Start/End: Complemental strand, 41726231 - 41726182
Alignment:
Q  377 ttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatgg 427  Q
    |||||||||||||| || |||||||| ||||| ||||||||||||||||||    
T  41726231 ttgtaatttaaaaaagg-tttacatttaaggacaaaaataaaatcaaatgg 41726182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 430
Target Start/End: Original strand, 3656087 - 3656139
Alignment:
Q  377 ttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatggatg 430  Q
    ||||||||||||||  | |||||||| ||||| |||||||||||||||||||||    
T  3656087 ttgtaatttaaaaaatg-tttacatttaaggacaaaaataaaatcaaatggatg 3656139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 426
Target Start/End: Complemental strand, 27679147 - 27679099
Alignment:
Q  377 ttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatg 426  Q
    |||||||||||||| || |||||||| ||||| |||||||||||||||||    
T  27679147 ttgtaatttaaaaaagg-tttacatttaaggacaaaaataaaatcaaatg 27679099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 374 - 426
Target Start/End: Complemental strand, 57128 - 57076
Alignment:
Q  374 atcttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatg 426  Q
    |||| ||||||| ||||||| |||||||| | ||| |||||||||||||||||    
T  57128 atctagtaatttgaaaaggggtttacatttagggacaaaaataaaatcaaatg 57076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 308 - 360
Target Start/End: Original strand, 12762939 - 12762990
Alignment:
Q  308 acttttcaaatttcaatgacaagttagtaatattaattaagagtatgtttagg 360  Q
    |||||||| ||||||| |||||||||||||||||||||| | |||| ||||||    
T  12762939 acttttcatatttcaa-gacaagttagtaatattaattaggggtatctttagg 12762990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 312 - 360
Target Start/End: Complemental strand, 14522349 - 14522302
Alignment:
Q  312 ttcaaatttcaatgacaagttagtaatattaattaagagtatgtttagg 360  Q
    |||||||||||| || ||||||||| ||||||||||| |||||||||||    
T  14522349 ttcaaatttcaa-gataagttagtagtattaattaagggtatgtttagg 14522302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 374 - 426
Target Start/End: Original strand, 14739600 - 14739652
Alignment:
Q  374 atcttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatg 426  Q
    |||| |||||||| ||||||||||||||| |  |||||| |||||||||||||    
T  14739600 atctagtaatttagaaagggatttacatttagagataaagataaaatcaaatg 14739652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 308 - 360
Target Start/End: Original strand, 40517837 - 40517888
Alignment:
Q  308 acttttcaaatttcaatgacaagttagtaatattaattaagagtatgtttagg 360  Q
    |||||| ||||||||| |||||||||||| ||||||||| | |||||||||||    
T  40517837 actttttaaatttcaa-gacaagttagtagtattaattaggggtatgtttagg 40517888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 374 - 430
Target Start/End: Complemental strand, 40601980 - 40601924
Alignment:
Q  374 atcttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatggatg 430  Q
    |||| ||||||| ||||| | |||||||| ||||| ||||||||| |||||||||||    
T  40601980 atctagtaatttgaaaagaggtttacatttaaggacaaaaataaagtcaaatggatg 40601924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 308 - 360
Target Start/End: Original strand, 45203855 - 45203906
Alignment:
Q  308 acttttcaaatttcaatgacaagttagtaatattaattaagagtatgtttagg 360  Q
    |||||||| ||||||| |||||||||||| ||||||||| | |||||||||||    
T  45203855 acttttcatatttcaa-gacaagttagtagtattaattaggggtatgtttagg 45203906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 308 - 456
Target Start/End: Original strand, 51997051 - 51997203
Alignment:
Q  308 acttttcaaatttcaatgacaagttagtaatattaattaagagtatgtttagg----nnnnnnnnnntgtatcttgtaatttaaaaagggatttacattg 403  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||              || || ||||||||| |||||||  |||||||     
T  51997051 acttttcaaatttcaaagacaagttagtagtattaattaagagtatgtttaggaaaaaaataataaatgcatattgtaatttgaaaaggggattacattt 51997150  T
Q  404 aaggataaaaataaaatcaaatggatgactacattaagggacggagcgagtat 456  Q
    | ||| |||||||||||||||||| || |||||||||||||| ||| ||||||    
T  51997151 agggacaaaaataaaatcaaatgggtggctacattaagggacagagggagtat 51997203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 308 - 358
Target Start/End: Complemental strand, 4817913 - 4817864
Alignment:
Q  308 acttttcaaatttcaatgacaagttagtaatattaattaagagtatgttta 358  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  4817913 acttttcaaatttcaa-gacaagttagtagtattaattaagagtatgttta 4817864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 308 - 358
Target Start/End: Complemental strand, 4829713 - 4829664
Alignment:
Q  308 acttttcaaatttcaatgacaagttagtaatattaattaagagtatgttta 358  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  4829713 acttttcaaatttcaa-gacaagttagtagtattaattaagagtatgttta 4829664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 308 - 425
Target Start/End: Original strand, 46495405 - 46495525
Alignment:
Q  308 acttttcaaatttcaatgacaagttagtaatattaattaagagtatgtttaggnnnnnnnnnn---tgtatcttgtaatttaaaaagggatttacattga 404  Q
    |||||||||||||||| ||||||||| || ||||||||||| ||||| |||||             || ||||||||||||||||| ||||||||||| |    
T  46495405 acttttcaaatttcaaagacaagttaatagtattaattaagcgtatgcttaggaaaaaataataaatgcatcttgtaatttaaaaaaggatttacattta 46495504  T
Q  405 aggataaaaataaaatcaaat 425  Q
     ||| ||||||||||||||||    
T  46495505 cggacaaaaataaaatcaaat 46495525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 428
Target Start/End: Original strand, 24415154 - 24415208
Alignment:
Q  374 atcttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatgga 428  Q
    |||| ||||||||||| |||||||| ||| ||||||||||||||| |||||||||    
T  24415154 atctagtaatttaaaaggggatttatatttaaggataaaaataaagtcaaatgga 24415208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 358
Target Start/End: Original strand, 44335388 - 44335438
Alignment:
Q  308 acttttcaaatttcaatgacaagttagtaatattaattaagagtatgttta 358  Q
    |||||||||||||||| |||||||||||| |||||||||||  ||||||||    
T  44335388 acttttcaaatttcaaagacaagttagtagtattaattaaggatatgttta 44335438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 426
Target Start/End: Original strand, 44395709 - 44395755
Alignment:
Q  380 taatttaaaaagggatttacattgaaggataaaaataaaatcaaatg 426  Q
    |||||||||||| |||||| ||| |||||||||||||||||||||||    
T  44395709 taatttaaaaagagatttatatttaaggataaaaataaaatcaaatg 44395755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 10842297 - 10842350
Alignment:
Q  181 cgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgt 233  Q
    |||||||||||||||  | |||||||||||||||||||| ||||||||||||||    
T  10842297 cgtccctatatataacccccttttacttttttcacatttcttaagaaaagttgt 10842350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 31305282 - 31305339
Alignment:
Q  177 cctccgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgt 233  Q
    ||||||||||||||| |||| | ||||| |||||||||||||| ||||||||||||||    
T  31305282 cctccgtccctatatgtaaaccccttttgcttttttcacatttattaagaaaagttgt 31305339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 308 - 357
Target Start/End: Original strand, 47643636 - 47643684
Alignment:
Q  308 acttttcaaatttcaatgacaagttagtaatattaattaagagtatgttt 357  Q
    |||||||||||||||| |||||||||||| ||||||||||| ||||||||    
T  47643636 acttttcaaatttcaa-gacaagttagtagtattaattaagggtatgttt 47643684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 371 - 427
Target Start/End: Complemental strand, 5321963 - 5321907
Alignment:
Q  371 tgtatcttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatgg 427  Q
    ||||||| ||||||| ||||||| |||||||| | ||| ||||||||||||||||||    
T  5321963 tgtatctagtaatttgaaaaggggtttacatttagggacaaaaataaaatcaaatgg 5321907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 371 - 427
Target Start/End: Original strand, 25063374 - 25063430
Alignment:
Q  371 tgtatcttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatgg 427  Q
    ||||||| ||||||| ||||||  |||||||| ||||| ||||||||||||||||||    
T  25063374 tgtatctagtaatttgaaaaggagtttacatttaaggacaaaaataaaatcaaatgg 25063430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 374 - 457
Target Start/End: Complemental strand, 15512719 - 15512636
Alignment:
Q  374 atcttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatggatgactacattaagggacggagcgagtata 457  Q
    |||| ||||||| ||||||  |||||||| | ||| |||||||||||||||||| ||  |||||  |||||||||| |||||||    
T  15512719 atctagtaatttgaaaaggagtttacatttagggacaaaaataaaatcaaatgggtgcttacatatagggacggagggagtata 15512636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 374 - 457
Target Start/End: Complemental strand, 28948902 - 28948819
Alignment:
Q  374 atcttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatggatgactacattaagggacggagcgagtata 457  Q
    |||| ||||||| ||||||  |||||||| | ||| |||||||||||||||||| ||  |||||  |||||||||| |||||||    
T  28948902 atctagtaatttgaaaaggagtttacatttagggacaaaaataaaatcaaatgggtgcttacatatagggacggagggagtata 28948819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 427
Target Start/End: Original strand, 9293852 - 9293901
Alignment:
Q  377 ttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatgg 427  Q
    |||||||||||||| || |||||||| ||||| ||||||||||||||||||    
T  9293852 ttgtaatttaaaaaagg-tttacatttaaggacaaaaataaaatcaaatgg 9293901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 380 - 430
Target Start/End: Complemental strand, 9684648 - 9684598
Alignment:
Q  380 taatttaaaaagggatttacattgaaggataaaaataaaatcaaatggatg 430  Q
    |||||||||||||| |||||||| ||  | |||||||||||||||||||||    
T  9684648 taatttaaaaaggggtttacatttaataacaaaaataaaatcaaatggatg 9684598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 455
Target Start/End: Complemental strand, 12844078 - 12844000
Alignment:
Q  377 ttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatggatgactacattaagggacggagcgagta 455  Q
    ||||||||||||||||| |||||||| | ||| |||||||||| |||| || ||  |||||  |||||||||| |||||    
T  12844078 ttgtaatttaaaaaggggtttacatttagggacaaaaataaaaacaaaagggtggttacatatagggacggagggagta 12844000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 427
Target Start/End: Original strand, 44258000 - 44258049
Alignment:
Q  377 ttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatgg 427  Q
    |||||||||||||| || |||||||| ||||| ||||||||||||||||||    
T  44258000 ttgtaatttaaaaaagg-tttacatttaaggacaaaaataaaatcaaatgg 44258049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 4813597 - 4813544
Alignment:
Q  181 cgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgt 233  Q
    |||||||||||||||  | ||||| |||||||||||||| ||||||||||||||    
T  4813597 cgtccctatatataacccccttttgcttttttcacatttcttaagaaaagttgt 4813544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 427
Target Start/End: Complemental strand, 5085027 - 5084974
Alignment:
Q  374 atcttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatgg 427  Q
    |||| ||||||| ||||||| |||||||| | ||| ||||||||||||||||||    
T  5085027 atctagtaatttgaaaaggggtttacatttagggacaaaaataaaatcaaatgg 5084974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 311 - 359
Target Start/End: Complemental strand, 15911556 - 15911509
Alignment:
Q  311 tttcaaatttcaatgacaagttagtaatattaattaagagtatgtttag 359  Q
    ||||| ||||||| |||||||||||||||||||||||  ||||||||||    
T  15911556 tttcatatttcaa-gacaagttagtaatattaattaaaggtatgtttag 15911509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 308 - 360
Target Start/End: Original strand, 34012583 - 34012634
Alignment:
Q  308 acttttcaaatttcaatgacaagttagtaatattaattaagagtatgtttagg 360  Q
    |||||||| ||||||| |||||| ||||| ||||||||||| |||||||||||    
T  34012583 acttttcatatttcaa-gacaagatagtagtattaattaagggtatgtttagg 34012634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 374 - 430
Target Start/End: Complemental strand, 34696821 - 34696765
Alignment:
Q  374 atcttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatggatg 430  Q
    |||| ||||||| ||||||| |||||||| | | | |||||||||||||||||||||    
T  34696821 atctagtaatttgaaaaggggtttacatttaggaacaaaaataaaatcaaatggatg 34696765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 310 - 346
Target Start/End: Original strand, 46591200 - 46591235
Alignment:
Q  310 ttttcaaatttcaatgacaagttagtaatattaatta 346  Q
    |||||||||||||| ||||||||||||||||||||||    
T  46591200 ttttcaaatttcaa-gacaagttagtaatattaatta 46591235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 308 - 360
Target Start/End: Complemental strand, 51390544 - 51390493
Alignment:
Q  308 acttttcaaatttcaatgacaagttagtaatattaattaagagtatgtttagg 360  Q
    |||||||| ||||||| |||||||||||| | ||||||||| |||||||||||    
T  51390544 acttttcatatttcaa-gacaagttagtagttttaattaagggtatgtttagg 51390493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 310 - 455
Target Start/End: Original strand, 20123549 - 20123692
Alignment:
Q  310 ttttcaaatttcaatgacaagttagtaatattaattaagagtatgtttaggnnnnnnnnnntgtatcttgtaatttaaaaagggatttacattgaaggat 409  Q
    |||||||||||||| ||||||||| || |||||||||||  |||| |||||          || |||||||||||| ||| ||| |||||||| | |||     
T  20123549 ttttcaaatttcaaagacaagttattagtattaattaagtatatgcttaggaaaaaaaaa-tgcatcttgtaatttgaaagggg-tttacatttagggac 20123646  T
Q  410 aaaaataaaatcaaatggatgactacattaagggacggagcgagta 455  Q
    |||||||||||||||||| || |||||||||||||||||| |||||    
T  20123647 aaaaataaaatcaaatgggtggctacattaagggacggagggagta 20123692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 379 - 430
Target Start/End: Original strand, 36858365 - 36858415
Alignment:
Q  379 gtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatggatg 430  Q
    |||||||||||| || |||||||| ||||| |||||||||||||||||||||    
T  36858365 gtaatttaaaaaagg-tttacatttaaggacaaaaataaaatcaaatggatg 36858415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 455
Target Start/End: Complemental strand, 25098322 - 25098244
Alignment:
Q  377 ttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatggatgactacattaagggacggagcgagta 455  Q
    ||||||||| |||| ||||||||||| ||||| |||||||||| |||| || ||  |||||  |||||||||| |||||    
T  25098322 ttgtaatttgaaaaaggatttacatttaaggacaaaaataaaaacaaaagggtggttacatatagggacggagggagta 25098244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 427
Target Start/End: Original strand, 29983465 - 29983514
Alignment:
Q  377 ttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatgg 427  Q
    |||||||||||||| | ||||||||| ||||| ||||||||||||||||||    
T  29983465 ttgtaatttaaaaaag-atttacatttaaggacaaaaataaaatcaaatgg 29983514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 455
Target Start/End: Complemental strand, 5333838 - 5333757
Alignment:
Q  374 atcttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatggatgactacattaagggacggagcgagta 455  Q
    |||| ||||||||||||||| |||||||| | ||| ||||||||| ||||||| |||  |||||  |||||| ||| |||||    
T  5333838 atctagtaatttaaaaaggggtttacatttagggacaaaaataaagtcaaatgtatgtttacatatagggaccgagggagta 5333757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 358
Target Start/End: Original strand, 33181408 - 33181441
Alignment:
Q  325 gacaagttagtaatattaattaagagtatgttta 358  Q
    |||||||||||||||||||||| |||||||||||    
T  33181408 gacaagttagtaatattaattaggagtatgttta 33181441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 308 - 360
Target Start/End: Original strand, 1324805 - 1324856
Alignment:
Q  308 acttttcaaatttcaatgacaagttagtaatattaattaagagtatgtttagg 360  Q
    |||||||| ||||||| |||||||||||| ||||||||| | |||||||||||    
T  1324805 acttttcatatttcaa-gacaagttagtagtattaattaggggtatgtttagg 1324856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 379 - 427
Target Start/End: Complemental strand, 2276513 - 2276465
Alignment:
Q  379 gtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatgg 427  Q
    ||||||| ||||| |||||||||| | ||| ||||||||||||||||||    
T  2276513 gtaatttgaaaagcgatttacatttagggacaaaaataaaatcaaatgg 2276465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 308 - 360
Target Start/End: Complemental strand, 2276585 - 2276534
Alignment:
Q  308 acttttcaaatttcaatgacaagttagtaatattaattaagagtatgtttagg 360  Q
    |||||||||||||||| || |||||| || ||||||||||| |||||||||||    
T  2276585 acttttcaaatttcaa-gataagttactagtattaattaagggtatgtttagg 2276534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 374 - 426
Target Start/End: Original strand, 10685250 - 10685302
Alignment:
Q  374 atcttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatg 426  Q
    |||| ||||||| ||||||| |||||||| | ||| |||||||||||||||||    
T  10685250 atctagtaatttgaaaaggggtttacatttagggacaaaaataaaatcaaatg 10685302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 176 - 235
Target Start/End: Original strand, 20123414 - 20123474
Alignment:
Q  176 tcctccgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgtca 235  Q
    |||||||||||||||| ||||   | ||| |||||||||||||| ||||||||||||||||    
T  20123414 tcctccgtccctatatgtaaactccctttgcttttttcacatttcttaagaaaagttgtca 20123474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 308 - 360
Target Start/End: Complemental strand, 42983622 - 42983571
Alignment:
Q  308 acttttcaaatttcaatgacaagttagtaatattaattaagagtatgtttagg 360  Q
    |||||||| ||||||| |||||||||||| ||||||||||  |||||||||||    
T  42983622 acttttcatatttcaa-gacaagttagtagtattaattaatggtatgtttagg 42983571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 379 - 431
Target Start/End: Complemental strand, 47458121 - 47458069
Alignment:
Q  379 gtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatggatga 431  Q
    |||||||||||||| ||||||||| | ||| ||||||||||| |||| |||||    
T  47458121 gtaatttaaaaaggaatttacatttagggacaaaaataaaattaaatagatga 47458069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 310 - 360
Target Start/End: Original strand, 11459252 - 11459301
Alignment:
Q  310 ttttcaaatttcaatgacaagttagtaatattaattaagagtatgtttagg 360  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  11459252 ttttcaaatttcaa-gacaagttagtagtattaattaagagtatgtttagg 11459301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 380 - 429
Target Start/End: Original strand, 11459326 - 11459375
Alignment:
Q  380 taatttaaaaagggatttacattgaaggataaaaataaaatcaaatggat 429  Q
    |||||||||||| |||||| ||| |||||||||||||||||| |||||||    
T  11459326 taatttaaaaagagatttatatttaaggataaaaataaaatcgaatggat 11459375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 377 - 430
Target Start/End: Original strand, 24128983 - 24129035
Alignment:
Q  377 ttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatggatg 430  Q
    |||||||||||||| || |||||||| ||||| |||||||||||||||||||||    
T  24128983 ttgtaatttaaaaaagg-tttacatttaaggacaaaaataaaatcaaatggatg 24129035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 374 - 430
Target Start/End: Original strand, 534631 - 534687
Alignment:
Q  374 atcttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatggatg 430  Q
    |||| ||||||| ||||| | |||||||| ||||| |||||||||||||||||||||    
T  534631 atctagtaatttgaaaagaggtttacatttaaggacaaaaataaaatcaaatggatg 534687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 374 - 430
Target Start/End: Original strand, 3237881 - 3237937
Alignment:
Q  374 atcttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatggatg 430  Q
    |||| ||||||||||||||  |||||||| | ||| |||||||||||||||||||||    
T  3237881 atctagtaatttaaaaaggagtttacatttagggacaaaaataaaatcaaatggatg 3237937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 374 - 425
Target Start/End: Complemental strand, 7278552 - 7278501
Alignment:
Q  374 atcttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaat 425  Q
    |||| ||||||| |||||||||||||||| |  |||||||||||||||||||    
T  7278552 atctagtaatttgaaaagggatttacatttagagataaaaataaaatcaaat 7278501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 235
Target Start/End: Complemental strand, 28265091 - 28265032
Alignment:
Q  177 cctccgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgtca 235  Q
    ||||| ||||| ||||||| ||| |||| |||||||||||||| ||||||||||||||||    
T  28265091 cctccctccctgtatataagtcttttttgcttttttcacatttcttaagaaaagttgtca 28265032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 455
Target Start/End: Original strand, 17663790 - 17663871
Alignment:
Q  374 atcttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatggatgactacattaagggacggagcgagta 455  Q
    |||| ||||||| ||||||  |||||||| | ||| |||||||||||||||||| ||  |||||  |||||||||| |||||    
T  17663790 atctagtaatttgaaaaggagtttacatttagggacaaaaataaaatcaaatgggtgcttacatatagggacggagggagta 17663871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 455
Target Start/End: Original strand, 20362148 - 20362229
Alignment:
Q  374 atcttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatggatgactacattaagggacggagcgagta 455  Q
    |||| ||||||| ||||||  |||||||| | ||| |||||||||||||||||| ||  |||||  |||||||||| |||||    
T  20362148 atctagtaatttgaaaaggagtttacatttagggacaaaaataaaatcaaatgggtgcttacatatagggacggagggagta 20362229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 427
Target Start/End: Original strand, 27749633 - 27749686
Alignment:
Q  374 atcttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatgg 427  Q
    |||||||||||| ||||||  |||||||| | ||| ||||||||||||||||||    
T  27749633 atcttgtaatttgaaaaggagtttacatttagggacaaaaataaaatcaaatgg 27749686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 371 - 427
Target Start/End: Original strand, 3645482 - 3645538
Alignment:
Q  371 tgtatcttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatgg 427  Q
    |||||||  |||||| |||||||| ||||||| | ||||||||| ||||||||||||    
T  3645482 tgtatctaataatttgaaaagggacttacatttagggataaaaagaaaatcaaatgg 3645538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 374 - 430
Target Start/End: Original strand, 4033992 - 4034048
Alignment:
Q  374 atcttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatggatg 430  Q
    |||| |||||||| ||||||  ||||||| |||||  ||||||||||||||||||||    
T  4033992 atctagtaatttagaaaggggattacatttaaggactaaaataaaatcaaatggatg 4034048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 308 - 360
Target Start/End: Original strand, 14420773 - 14420824
Alignment:
Q  308 acttttcaaatttcaatgacaagttagtaatattaattaagagtatgtttagg 360  Q
    |||||||||||||||| |||| |||| || ||||||||| |||||||||||||    
T  14420773 acttttcaaatttcaa-gacatgttattagtattaattaggagtatgtttagg 14420824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 374 - 430
Target Start/End: Original strand, 44424759 - 44424815
Alignment:
Q  374 atcttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatggatg 430  Q
    |||| ||||||| |||| || |||||||| | ||| |||||||||||||||||||||    
T  44424759 atctagtaatttgaaaaagggtttacatttagggacaaaaataaaatcaaatggatg 44424815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 308 - 360
Target Start/End: Original strand, 1763910 - 1763961
Alignment:
Q  308 acttttcaaatttcaatgacaagttagtaatattaattaagagtatgtttagg 360  Q
    |||||||||||||||| |||||||||||| ||||||||||| |||||||||||    
T  1763910 acttttcaaatttcaa-gacaagttagtagtattaattaagggtatgtttagg 1763961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 382 - 455
Target Start/End: Complemental strand, 22410774 - 22410701
Alignment:
Q  382 atttaaaaagggatttacattgaaggataaaaataaaatcaaatggatgactacattaagggacggagcgagta 455  Q
    |||| |||| ||||||||||| | ||| |||||||||||||||||| || |||||||||| ||| ||| |||||    
T  22410774 atttgaaaaaggatttacatttagggacaaaaataaaatcaaatgggtggctacattaagagacagagggagta 22410701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 308 - 359
Target Start/End: Original strand, 3729519 - 3729569
Alignment:
Q  308 acttttcaaatttcaatgacaagttagtaatattaattaagagtatgtttag 359  Q
    ||||| || ||||||| |||||||||||||||||||||| ||||||||||||    
T  3729519 actttacatatttcaa-gacaagttagtaatattaattaggagtatgtttag 3729569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 374 - 456
Target Start/End: Original strand, 19839097 - 19839179
Alignment:
Q  374 atcttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatggatgactacattaagggacggagcgagtat 456  Q
    |||| ||||||| ||||||  |||||||| | ||| |||||||||||||||||| ||  |||||  |||||||||| ||||||    
T  19839097 atctagtaatttgaaaaggagtttacatttagggacaaaaataaaatcaaatgggtgcttacatatagggacggagggagtat 19839179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 427
Target Start/End: Complemental strand, 24068070 - 24068021
Alignment:
Q  377 ttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatgg 427  Q
    |||||||||||||| || |||||||| ||||| ||||||||||||||||||    
T  24068070 ttgtaatttaaaaaagg-tttacatttaaggacaaaaataaaatcaaatgg 24068021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 308 - 360
Target Start/End: Original strand, 30248959 - 30249010
Alignment:
Q  308 acttttcaaatttcaatgacaagttagtaatattaattaagagtatgtttagg 360  Q
    |||||||| ||||||| |||||||||||| ||||||||| | |||||||||||    
T  30248959 acttttcatatttcaa-gacaagttagtagtattaattaggggtatgtttagg 30249010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 372 - 412
Target Start/End: Complemental strand, 31481918 - 31481878
Alignment:
Q  372 gtatcttgtaatttaaaaagggatttacattgaaggataaa 412  Q
    |||||| |||||||||||| ||||||||||| |||||||||    
T  31481918 gtatctagtaatttaaaaaaggatttacatttaaggataaa 31481878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 374 - 437
Target Start/End: Original strand, 22651630 - 22651693
Alignment:
Q  374 atcttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatggatgactacat 437  Q
    |||| ||||||| ||||||  |||||||| |||||||||||||||||||||||| ||| |||||    
T  22651630 atctagtaatttgaaaaggagtttacatttaaggataaaaataaaatcaaatgggtgattacat 22651693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 429
Target Start/End: Original strand, 51787933 - 51787991
Alignment:
Q  371 tgtatcttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatggat 429  Q
    ||||||| ||||||||||||||  |||| ||| ||||| ||||||||||||||||||||    
T  51787933 tgtatctagtaatttaaaaaggagtttatatttaaggacaaaaataaaatcaaatggat 51787991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 374 - 455
Target Start/End: Original strand, 12624862 - 12624943
Alignment:
Q  374 atcttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatggatgactacattaagggacggagcgagta 455  Q
    |||| ||||||| ||||||  |||||||| ||||| |||||||||||||||||| ||  |||||  |||||||||| |||||    
T  12624862 atctagtaatttgaaaaggagtttacatttaaggacaaaaataaaatcaaatgggtgcttacatatagggacggagggagta 12624943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 13096681 - 13096625
Alignment:
Q  177 cctccgtccctatatataaatctcttttacttttttcacatttttaagaaaagttgt 233  Q
    ||||||||||| ||| ||||   | ||||||||||||||||||||||||||||||||    
T  13096681 cctccgtccctgtatttaaactccctttacttttttcacatttttaagaaaagttgt 13096625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 374 - 426
Target Start/End: Original strand, 31917541 - 31917593
Alignment:
Q  374 atcttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatg 426  Q
    |||| ||||||| |||| || |||||||| |||||||||||||||||||||||    
T  31917541 atctagtaatttgaaaaagggtttacatttaaggataaaaataaaatcaaatg 31917593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 235
Target Start/End: Original strand, 20293708 - 20293767
Alignment:
Q  177 cctccgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgtca 235  Q
    |||||||| |||||| ||||| || ||| |||||||||||||| ||||||||||||||||    
T  20293708 cctccgtctctatatctaaatttcctttgcttttttcacatttcttaagaaaagttgtca 20293767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 374 - 425
Target Start/End: Original strand, 30050151 - 30050202
Alignment:
Q  374 atcttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaat 425  Q
    |||| |||||||||||| | ||||||||| ||| ||||||||||||||||||    
T  30050151 atctagtaatttaaaaaagaatttacatttaagaataaaaataaaatcaaat 30050202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 371 - 430
Target Start/End: Original strand, 38136513 - 38136572
Alignment:
Q  371 tgtatcttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatggatg 430  Q
    ||||||| ||||||| ||||||  |||||||| | ||||||||||||| |||||||||||    
T  38136513 tgtatctagtaatttgaaaaggagtttacatttatggataaaaataaagtcaaatggatg 38136572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 380 - 427
Target Start/End: Original strand, 46729477 - 46729524
Alignment:
Q  380 taatttaaaaagggatttacattgaaggataaaaataaaatcaaatgg 427  Q
    |||||||||||| |||||||||| | ||| ||||||||||||||||||    
T  46729477 taatttaaaaagagatttacatttagggacaaaaataaaatcaaatgg 46729524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 427
Target Start/End: Original strand, 11792604 - 11792653
Alignment:
Q  377 ttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatgg 427  Q
    |||||||||||||| || |||||||| ||||| ||||||||||||||||||    
T  11792604 ttgtaatttaaaaaagg-tttacatttaaggacaaaaataaaatcaaatgg 11792653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 427
Target Start/End: Original strand, 11861271 - 11861320
Alignment:
Q  377 ttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatgg 427  Q
    |||||||||||||| || |||||||| ||||| ||||||||||||||||||    
T  11861271 ttgtaatttaaaaaagg-tttacatttaaggacaaaaataaaatcaaatgg 11861320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 427
Target Start/End: Complemental strand, 23611410 - 23611361
Alignment:
Q  377 ttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatgg 427  Q
    |||||||||||||| || |||||||| ||||| ||||||||||||||||||    
T  23611410 ttgtaatttaaaaaagg-tttacatttaaggacaaaaataaaatcaaatgg 23611361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 371 - 437
Target Start/End: Original strand, 26203294 - 26203360
Alignment:
Q  371 tgtatcttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatggatgactacat 437  Q
    |||||||  |||||| ||||||  |||||||| ||||| |||| ||||||||||||||||| |||||    
T  26203294 tgtatctaataatttgaaaaggagtttacatttaaggacaaaagtaaaatcaaatggatgattacat 26203360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 374 - 448
Target Start/End: Original strand, 52676187 - 52676261
Alignment:
Q  374 atcttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatggatgactacattaagggacgga 448  Q
    ||||| |||||||||||||| |||||||| |   | |||||| ||||||||||| || |||||||||| ||||||    
T  52676187 atcttataatttaaaaaggggtttacatttagaaaaaaaaatcaaatcaaatgggtggctacattaagagacgga 52676261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 14602791 - 14602738
Alignment:
Q  181 cgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgt 233  Q
    ||||| |||||||||  | |||||||||||||||||||| ||||||||||||||    
T  14602791 cgtccttatatataacccccttttacttttttcacatttcttaagaaaagttgt 14602738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 427
Target Start/End: Original strand, 20792154 - 20792210
Alignment:
Q  371 tgtatcttgtaatttaaaaagggatttacattgaaggat-aaaaataaaatcaaatgg 427  Q
    ||||||| ||||||||||||| ||||||||||  ||||| ||||||||||||||||||    
T  20792154 tgtatctagtaatttaaaaagagatttacatt-taggatcaaaaataaaatcaaatgg 20792210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 722358 - 722414
Alignment:
Q  178 ctccgtccctatatataaatctcttttacttttttcaca-tttttaagaaaagttgt 233  Q
    |||| |||||||||||||  | ||||| ||||||||||| |||||||||||||||||    
T  722358 ctccatccctatatataacccccttttgcttttttcacattttttaagaaaagttgt 722414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 423 - 455
Target Start/End: Complemental strand, 5448654 - 5448622
Alignment:
Q  423 aatggatgactacattaagggacggagcgagta 455  Q
    |||||||| ||||||||||||||||||||||||    
T  5448654 aatggatgcctacattaagggacggagcgagta 5448622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 207 - 235
Target Start/End: Original strand, 5932882 - 5932910
Alignment:
Q  207 ttttttcacatttttaagaaaagttgtca 235  Q
    |||||||||||||||||||||||||||||    
T  5932882 ttttttcacatttttaagaaaagttgtca 5932910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 308 - 360
Target Start/End: Complemental strand, 10602218 - 10602167
Alignment:
Q  308 acttttcaaatttcaatgacaagttagtaatattaattaagagtatgtttagg 360  Q
    |||||||| |||||||  |||| |||||| |||||||||||||||||||||||    
T  10602218 acttttcatatttcaaa-acaaattagtagtattaattaagagtatgtttagg 10602167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 308 - 360
Target Start/End: Complemental strand, 30153230 - 30153180
Alignment:
Q  308 acttttcaaatttcaatgacaagttagtaatattaattaagagtatgtttagg 360  Q
    |||||||| ||||||| |||||||||||| |||||||| ||||||||||||||    
T  30153230 acttttcatatttcaa-gacaagttagtagtattaatt-agagtatgtttagg 30153180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 308 - 360
Target Start/End: Complemental strand, 37625133 - 37625082
Alignment:
Q  308 acttttcaaatttcaatgacaagttagtaatattaattaagagtatgtttagg 360  Q
    |||||||| ||||||| ||  |||||||| |||||||||||||||||||||||    
T  37625133 acttttcatatttcaa-gattagttagtagtattaattaagagtatgtttagg 37625082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 177 - 232
Target Start/End: Original strand, 39414201 - 39414257
Alignment:
Q  177 cctccgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttg 232  Q
    |||| ||||||||||||||  || |||||||||||||| |||| |||||||||||||    
T  39414201 cctctgtccctatatataaccctgttttacttttttcatatttcttaagaaaagttg 39414257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 308 - 360
Target Start/End: Complemental strand, 41945781 - 41945730
Alignment:
Q  308 acttttcaaatttcaatgacaagttagtaatattaattaagagtatgtttagg 360  Q
    |||||||| ||||||| |||||| |||||||||||| || |||||||||||||    
T  41945781 acttttcatatttcaa-gacaagatagtaatattaagtaggagtatgtttagg 41945730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 371 - 427
Target Start/End: Complemental strand, 52552454 - 52552398
Alignment:
Q  371 tgtatcttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatgg 427  Q
    |||||||  ||||||||||||||||||| ||| | ||| ||||||||| ||||||||    
T  52552454 tgtatctaataatttaaaaagggatttatatttagggacaaaaataaagtcaaatgg 52552398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 308 - 348
Target Start/End: Original strand, 52676117 - 52676157
Alignment:
Q  308 acttttcaaatttcaatgacaagttagtaatattaattaag 348  Q
    |||||||||||||||| ||||||||| || |||||||||||    
T  52676117 acttttcaaatttcaaagacaagttaatagtattaattaag 52676157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 358
Target Start/End: Original strand, 10934103 - 10934152
Alignment:
Q  308 acttttcaaatttcaatgacaagttagtaatattaattaagagtatgttta 358  Q
    |||||||| |||||||| |||||||||||||||||||||||| ||||||||    
T  10934103 acttttcatatttcaat-acaagttagtaatattaattaagaatatgttta 10934152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 360
Target Start/End: Original strand, 27587937 - 27587986
Alignment:
Q  310 ttttcaaatttcaatgacaagttagtaatattaattaagagtatgtttagg 360  Q
    ||||||||||||||| ||||||||||| ||||| |||||||||||||||||    
T  27587937 ttttcaaatttcaat-acaagttagtagtattatttaagagtatgtttagg 27587986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 14044633 - 14044580
Alignment:
Q  181 cgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgt 233  Q
    ||||||||||||||| ||  ||||||||||||||||||| ||||||||||||||    
T  14044633 cgtccctatatataactccgttttacttttttcacatttcttaagaaaagttgt 14044580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 371 - 424
Target Start/End: Original strand, 18032758 - 18032811
Alignment:
Q  371 tgtatcttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaa 424  Q
    ||||| ||||||||| ||||||| |||||||| ||||| |||||||||||||||    
T  18032758 tgtatgttgtaatttgaaaagggctttacatttaaggacaaaaataaaatcaaa 18032811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 308 - 360
Target Start/End: Original strand, 5845273 - 5845324
Alignment:
Q  308 acttttcaaatttcaatgacaagttagtaatattaattaagagtatgtttagg 360  Q
    |||||||| |||||||| ||||||||||| ||||||||| |||||||||||||    
T  5845273 acttttcatatttcaat-acaagttagtagtattaattaggagtatgtttagg 5845324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 380 - 428
Target Start/End: Original strand, 34877838 - 34877886
Alignment:
Q  380 taatttaaaaagggatttacattgaaggataaaaataaaatcaaatgga 428  Q
    |||||||||| |||||||||||| | ||| |||||||||||||||||||    
T  34877838 taatttaaaaggggatttacatttatggacaaaaataaaatcaaatgga 34877886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 374 - 457
Target Start/End: Complemental strand, 39690424 - 39690341
Alignment:
Q  374 atcttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatggatgactacattaagggacggagcgagtata 457  Q
    |||| ||||||| ||||||  |||||||| | ||| |||||||||||||||||| ||  |||||  |||||||||| |||||||    
T  39690424 atctagtaatttgaaaaggagtttacatttagggacaaaaataaaatcaaatgggtgcttacatatagggacggagggagtata 39690341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 427
Target Start/End: Complemental strand, 8760977 - 8760928
Alignment:
Q  377 ttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatgg 427  Q
    |||||||||||||| || |||||||| ||||| ||||||||||||||||||    
T  8760977 ttgtaatttaaaaaagg-tttacatttaaggacaaaaataaaatcaaatgg 8760928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 426
Target Start/End: Complemental strand, 6514354 - 6514306
Alignment:
Q  377 ttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatg 426  Q
    |||||||||||||| || |||||||| ||||| |||||||||||||||||    
T  6514354 ttgtaatttaaaaaagg-tttacatttaaggacaaaaataaaatcaaatg 6514306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 360
Target Start/End: Complemental strand, 15898467 - 15898419
Alignment:
Q  311 tttcaaatttcaatgacaagttagtaatattaattaagagtatgtttagg 360  Q
    ||||||||||||| |||||||||| | |||||||||| ||||||||||||    
T  15898467 tttcaaatttcaa-gacaagttagcagtattaattaaaagtatgtttagg 15898419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 427
Target Start/End: Original strand, 21912286 - 21912339
Alignment:
Q  374 atcttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatgg 427  Q
    |||||||||||| ||||||  |||||||| | ||| ||||||||||||||||||    
T  21912286 atcttgtaatttgaaaaggagtttacatttagggacaaaaataaaatcaaatgg 21912339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 427
Target Start/End: Original strand, 27925439 - 27925492
Alignment:
Q  374 atcttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatgg 427  Q
    |||| ||||||| |||||||||||||||| | ||| ||||||||| ||||||||    
T  27925439 atctagtaatttgaaaagggatttacatttagggacaaaaataaagtcaaatgg 27925492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 374 - 430
Target Start/End: Complemental strand, 3631056 - 3631000
Alignment:
Q  374 atcttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatggatg 430  Q
    |||| ||||||| |||| |  |||||||| ||| |||||||||||||||||||||||    
T  3631056 atctagtaatttgaaaaagagtttacatttaagaataaaaataaaatcaaatggatg 3631000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 308 - 360
Target Start/End: Original strand, 29866286 - 29866337
Alignment:
Q  308 acttttcaaatttcaatgacaagttagtaatattaattaagagtatgtttagg 360  Q
    |||||||| ||||||| |||||||||||| ||||||||| | |||||||||||    
T  29866286 acttttcatatttcaa-gacaagttagtagtattaattaggggtatgtttagg 29866337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 371 - 427
Target Start/End: Original strand, 30317907 - 30317963
Alignment:
Q  371 tgtatcttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatgg 427  Q
    |||||||  |||||| |||||||| ||||||| | ||||||||| ||||||||||||    
T  30317907 tgtatctaataatttgaaaagggacttacatttagggataaaaagaaaatcaaatgg 30317963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 371 - 427
Target Start/End: Complemental strand, 30348024 - 30347968
Alignment:
Q  371 tgtatcttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatgg 427  Q
    |||||||  |||||| |||||||| ||||||| | ||||||||| ||||||||||||    
T  30348024 tgtatctaataatttgaaaagggacttacatttagggataaaaagaaaatcaaatgg 30347968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 374 - 430
Target Start/End: Original strand, 36177459 - 36177515
Alignment:
Q  374 atcttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatggatg 430  Q
    |||| ||||||| |||| | ||||||||| | ||| |||||||||||||||||||||    
T  36177459 atctagtaatttgaaaatgaatttacatttagggacaaaaataaaatcaaatggatg 36177515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 430
Target Start/End: Original strand, 26999214 - 26999264
Alignment:
Q  380 taatttaaaaagggatttacattgaaggataaaaataaaatcaaatggatg 430  Q
    |||||||||||||| ||||||||  |||| |||||||||||||||||||||    
T  26999214 taatttaaaaaggggtttacatttgaggacaaaaataaaatcaaatggatg 26999264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 377 - 430
Target Start/End: Complemental strand, 33987110 - 33987058
Alignment:
Q  377 ttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatggatg 430  Q
    |||||||||||||| || |||||||| ||||| |||||||||||||||||||||    
T  33987110 ttgtaatttaaaaaagg-tttacatttaaggacaaaaataaaatcaaatggatg 33987058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 374 - 426
Target Start/End: Complemental strand, 12077682 - 12077630
Alignment:
Q  374 atcttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatg 426  Q
    |||| ||||||| ||||||| |||||||| ||||| |||||||||||||||||    
T  12077682 atctagtaatttgaaaaggggtttacatttaaggacaaaaataaaatcaaatg 12077630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 308 - 360
Target Start/End: Complemental strand, 31531138 - 31531087
Alignment:
Q  308 acttttcaaatttcaatgacaagttagtaatattaattaagagtatgtttagg 360  Q
    |||||||||||||||| |||||||||||| ||||||||| | |||||||||||    
T  31531138 acttttcaaatttcaa-gacaagttagtagtattaattaggggtatgtttagg 31531087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 308 - 348
Target Start/End: Complemental strand, 46435742 - 46435702
Alignment:
Q  308 acttttcaaatttcaatgacaagttagtaatattaattaag 348  Q
    |||||||||||||||| |||||||||||| |||||||||||    
T  46435742 acttttcaaatttcaaagacaagttagtagtattaattaag 46435702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 427
Target Start/End: Complemental strand, 11676133 - 11676084
Alignment:
Q  377 ttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatgg 427  Q
    |||||||||||||| || |||||||| ||||| ||||||||||||||||||    
T  11676133 ttgtaatttaaaaaagg-tttacatttaaggacaaaaataaaatcaaatgg 11676084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 427
Target Start/End: Complemental strand, 30464959 - 30464910
Alignment:
Q  377 ttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatgg 427  Q
    |||||||||||||| || |||||||| ||||| ||||||||||||||||||    
T  30464959 ttgtaatttaaaaaagg-tttacatttaaggacaaaaataaaatcaaatgg 30464910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 371 - 429
Target Start/End: Complemental strand, 33411920 - 33411862
Alignment:
Q  371 tgtatcttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatggat 429  Q
    |||||||  |||||| |||| | ||||||||| ||| ||||||||||||||||||||||    
T  33411920 tgtatctaataatttgaaaatgaatttacatttaagaataaaaataaaatcaaatggat 33411862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 427
Target Start/End: Original strand, 33635113 - 33635162
Alignment:
Q  377 ttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatgg 427  Q
    |||||||||||||| || |||||||| ||||| ||||||||||||||||||    
T  33635113 ttgtaatttaaaaaagg-tttacatttaaggacaaaaataaaatcaaatgg 33635162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 427
Target Start/End: Complemental strand, 37599759 - 37599710
Alignment:
Q  377 ttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatgg 427  Q
    |||||||||||||| || |||||||| ||||| ||||||||||||||||||    
T  37599759 ttgtaatttaaaaaagg-tttacatttaaggacaaaaataaaatcaaatgg 37599710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 374 - 430
Target Start/End: Complemental strand, 13084301 - 13084245
Alignment:
Q  374 atcttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatggatg 430  Q
    |||| ||||||| ||||||  ||||| || |||||||||||||||||||| ||||||    
T  13084301 atctagtaatttgaaaaggagtttacgtttaaggataaaaataaaatcaattggatg 13084245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 379 - 427
Target Start/End: Complemental strand, 14645825 - 14645777
Alignment:
Q  379 gtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatgg 427  Q
    ||||||||||||||| |||||||| ||| | ||||||||| ||||||||    
T  14645825 gtaatttaaaaaggggtttacatttaagaacaaaaataaagtcaaatgg 14645777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 308 - 360
Target Start/End: Complemental strand, 26517225 - 26517174
Alignment:
Q  308 acttttcaaatttcaatgacaagttagtaatattaattaagagtatgtttagg 360  Q
    |||||||| ||||||| |||||||||||| ||||||||| | |||||||||||    
T  26517225 acttttcatatttcaa-gacaagttagtagtattaattaggggtatgtttagg 26517174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 308 - 360
Target Start/End: Original strand, 50363123 - 50363174
Alignment:
Q  308 acttttcaaatttcaatgacaagttagtaatattaattaagagtatgtttagg 360  Q
    |||||||| ||||||| |||||||||||| ||||||||| | |||||||||||    
T  50363123 acttttcatatttcaa-gacaagttagtagtattaattaggggtatgtttagg 50363174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 427
Target Start/End: Original strand, 12951 - 13000
Alignment:
Q  377 ttgtaatttaaaaagggatttacattgaaggataaaaataaaatcaaatgg 427  Q
    |||||||||||||| || |||||||| ||||| ||||||||||||||||||    
T  12951 ttgtaatttaaaaaagg-tttacatttaaggacaaaaataaaatcaaatgg 13000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 214587 - 214640
Alignment:
Q  181 cgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgt 233  Q
    ||||| |||||||||  | |||||||||||||||||||| ||||||||||||||    
T  214587 cgtccttatatataacccccttttacttttttcacatttcttaagaaaagttgt 214640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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