View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14010_high_16 (Length: 235)

Name: NF14010_high_16
Description: NF14010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14010_high_16
NF14010_high_16
[»] chr2 (18 HSPs)
chr2 (1-229)||(823930-824158)
chr2 (1-70)||(25067932-25068001)
chr2 (1-70)||(9978641-9978710)
chr2 (1-70)||(15919953-15920022)
chr2 (1-70)||(22597215-22597284)
chr2 (1-70)||(41797674-41797743)
chr2 (2-70)||(27095785-27095853)
chr2 (3-70)||(12704767-12704834)
chr2 (3-70)||(20561106-20561173)
chr2 (1-67)||(4739412-4739478)
chr2 (1-70)||(32314522-32314591)
chr2 (1-70)||(7072920-7072989)
chr2 (1-70)||(12891091-12891160)
chr2 (1-70)||(13878979-13879047)
chr2 (1-70)||(14019104-14019172)
chr2 (5-70)||(17116378-17116443)
chr2 (1-70)||(31908788-31908857)
chr2 (2-70)||(36868088-36868156)
[»] chr6 (9 HSPs)
chr6 (2-73)||(4921854-4921925)
chr6 (2-61)||(29284841-29284900)
chr6 (4-66)||(3610321-3610383)
chr6 (4-73)||(23654327-23654396)
chr6 (1-70)||(14783143-14783212)
chr6 (5-70)||(19402784-19402849)
chr6 (1-70)||(29927067-29927135)
chr6 (1-70)||(31937392-31937461)
chr6 (37-73)||(20028706-20028742)
[»] chr3 (11 HSPs)
chr3 (5-73)||(40716267-40716335)
chr3 (5-70)||(24520717-24520782)
chr3 (1-70)||(39610292-39610361)
chr3 (3-70)||(32080736-32080803)
chr3 (3-70)||(39429481-39429548)
chr3 (1-70)||(22485045-22485114)
chr3 (2-70)||(106016-106084)
chr3 (6-70)||(2147807-2147871)
chr3 (1-70)||(31270406-31270475)
chr3 (33-73)||(33193782-33193822)
chr3 (5-61)||(55125563-55125619)
[»] chr4 (24 HSPs)
chr4 (1-70)||(24825729-24825798)
chr4 (1-70)||(12717089-12717158)
chr4 (1-70)||(29922917-29922986)
chr4 (4-70)||(28837145-28837211)
chr4 (1-70)||(22757174-22757243)
chr4 (1-70)||(26742435-26742504)
chr4 (1-70)||(38944120-38944189)
chr4 (1-70)||(43244353-43244422)
chr4 (1-73)||(35945963-35946035)
chr4 (34-74)||(52465382-52465422)
chr4 (15-70)||(5814427-5814482)
chr4 (3-70)||(20887730-20887797)
chr4 (1-70)||(626521-626590)
chr4 (9-70)||(7060404-7060465)
chr4 (5-70)||(7083792-7083857)
chr4 (1-70)||(20399875-20399944)
chr4 (1-70)||(29268749-29268818)
chr4 (5-70)||(30202118-30202183)
chr4 (1-66)||(43493259-43493324)
chr4 (1-70)||(44757014-44757083)
chr4 (1-70)||(45351042-45351111)
chr4 (1-70)||(45360521-45360590)
chr4 (2-70)||(13965640-13965708)
chr4 (1-73)||(24568685-24568757)
[»] chr1 (16 HSPs)
chr1 (1-70)||(12871701-12871770)
chr1 (3-70)||(28678104-28678171)
chr1 (2-73)||(29069815-29069886)
chr1 (2-70)||(25689815-25689884)
chr1 (5-70)||(33487006-33487071)
chr1 (1-70)||(42490973-42491042)
chr1 (5-70)||(45193602-45193667)
chr1 (1-70)||(45750558-45750627)
chr1 (3-70)||(3232868-3232935)
chr1 (1-59)||(2513575-2513633)
chr1 (16-73)||(8744114-8744171)
chr1 (1-70)||(18343694-18343762)
chr1 (1-74)||(24114651-24114724)
chr1 (1-66)||(29205369-29205434)
chr1 (1-70)||(44517227-44517296)
chr1 (6-70)||(45425451-45425513)
[»] chr8 (15 HSPs)
chr8 (1-60)||(1039874-1039933)
chr8 (1-70)||(24791148-24791217)
chr8 (4-70)||(14600681-14600747)
chr8 (1-73)||(2025189-2025261)
chr8 (2-70)||(7579836-7579904)
chr8 (4-70)||(10338805-10338871)
chr8 (1-70)||(2234450-2234519)
chr8 (1-70)||(10148027-10148096)
chr8 (1-70)||(22787572-22787641)
chr8 (1-70)||(30026860-30026929)
chr8 (5-70)||(31202538-31202603)
chr8 (1-70)||(31308228-31308297)
chr8 (1-70)||(41361812-41361881)
chr8 (2-70)||(31407729-31407797)
chr8 (2-70)||(39067670-39067738)
[»] chr7 (25 HSPs)
chr7 (3-73)||(27050437-27050507)
chr7 (1-70)||(1281109-1281178)
chr7 (1-70)||(3266468-3266537)
chr7 (1-66)||(9785401-9785466)
chr7 (1-70)||(10094521-10094590)
chr7 (1-70)||(10574461-10574530)
chr7 (1-66)||(15017348-15017413)
chr7 (1-70)||(15674584-15674653)
chr7 (1-70)||(41288038-41288107)
chr7 (8-70)||(6495972-6496034)
chr7 (16-70)||(28664899-28664953)
chr7 (3-73)||(33476626-33476696)
chr7 (1-70)||(11833099-11833168)
chr7 (1-70)||(17473695-17473764)
chr7 (1-70)||(17579450-17579519)
chr7 (1-70)||(21990742-21990811)
chr7 (1-66)||(36579284-36579349)
chr7 (1-70)||(37376003-37376072)
chr7 (1-66)||(39532947-39533012)
chr7 (33-74)||(43998949-43998990)
chr7 (1-70)||(46026001-46026070)
chr7 (1-65)||(36253015-36253079)
chr7 (2-70)||(42603742-42603810)
chr7 (2-70)||(45482144-45482212)
chr7 (5-61)||(48304369-48304425)
[»] scaffold1379 (2 HSPs)
scaffold1379 (1-70)||(1058-1127)
scaffold1379 (1-66)||(59-124)
[»] chr5 (16 HSPs)
chr5 (1-70)||(18653862-18653931)
chr5 (3-70)||(35275961-35276029)
chr5 (1-70)||(17096211-17096280)
chr5 (1-70)||(17331408-17331477)
chr5 (1-70)||(34431140-34431209)
chr5 (1-73)||(32347686-32347758)
chr5 (1-68)||(23882088-23882155)
chr5 (3-70)||(33164442-33164509)
chr5 (1-70)||(12891756-12891825)
chr5 (1-70)||(17699633-17699702)
chr5 (1-70)||(27241144-27241213)
chr5 (1-66)||(29097873-29097938)
chr5 (1-70)||(39179800-39179869)
chr5 (1-70)||(178076-178147)
chr5 (37-73)||(585885-585921)
chr5 (2-70)||(32309243-32309311)
[»] scaffold0294 (1 HSPs)
scaffold0294 (1-70)||(4039-4108)
[»] scaffold0056 (1 HSPs)
scaffold0056 (1-70)||(74244-74313)
[»] scaffold0536 (1 HSPs)
scaffold0536 (2-70)||(2982-3050)
[»] scaffold0321 (1 HSPs)
scaffold0321 (1-70)||(7096-7165)
[»] scaffold0121 (1 HSPs)
scaffold0121 (1-66)||(13217-13282)


Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 823930 - 824158
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaataatgatataatacattctttttgtttatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  823930 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaataatgatataatacattctttttgtttatt 824029  T
Q  101 attaaatagcgaattgaccttgaatcccatcaaattagtgagattgaaagtatgatattttccgcaatttagttgacataagttttaacatatgagttta 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  824030 attaaatagcgaattgaccttgaatcccaccaaattagtgagattgaaagtatgatattttccgcaatttagttgacataagttttaacatatgagttta 824129  T
Q  201 tcatggttcttttagaatggggtttattt 229  Q
    |||||||||||||||||||||||||||||    
T  824130 tcatggttcttttagaatggggtttattt 824158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 25068001 - 25067932
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||||  ||||||||||| || || ||||| || ||||||| |||||||||||||||||||||    
T  25068001 ccgcacaaagacgggaaatcaaaacaaacagagtcgttcagagacgacgaaatcacaaaaagaaacgaaa 25067932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 9978641 - 9978710
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||||  ||||||||||| || || ||||| || ||||||| |||||||||||| ||||||||    
T  9978641 ccgcacaaagacgggaaatcaaaacaaacagagtcgttcagagacgacgaaatcacaaaaacaaacgaaa 9978710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 15920022 - 15919953
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||||  ||||||||||| || || |||||||| ||| ||| |||||||||||| ||||||||    
T  15920022 ccgcacaaagacgggaaatcaaaacaaacagagtcgtgcagagatgacgaaatcacaaaaacaaacgaaa 15919953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 22597284 - 22597215
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    |||||||||||||  |||||||||| || || ||||| || |||||||||||||| ||||| ||||||||    
T  22597284 ccgcacaaagacagaaaatcaaaacaaacagagtcgttcagagacgacaaaatcataaaaacaaacgaaa 22597215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 41797743 - 41797674
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||||  ||||||||||| || || ||||| | |||||||| |||||||||||| ||||||||    
T  41797743 ccgcacaaagacgggaaatcaaaacaaacagagtcgttctaagacgacgaaatcacaaaaacaaacgaaa 41797674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 27095853 - 27095785
Alignment:
Q  2 cgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||   ||||||||||| || || |||||||| ||||||| |||||||||||| ||||||||    
T  27095853 cgcacaaagaggggaaatcaaaacaaacagagtcgtgcagagacgacgaaatcacaaaaacaaacgaaa 27095785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 12704834 - 12704767
Alignment:
Q  3 gcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||  ||||||||||| || |  ||||| || |||||||||||||||||||| ||||||||    
T  12704834 gcacaaagacgggaaatcaaaacaaacaaagtcgttcagagacgacaaaatcacaaaaacaaacgaaa 12704767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 20561106 - 20561173
Alignment:
Q  3 gcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||  ||||||||||| || || ||||| || ||||||| |||||||||||| ||||||||    
T  20561106 gcacaaagacgggaaatcaaaacaaacagagtcgttcagagacgacgaaatcacaaaaacaaacgaaa 20561173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 4739478 - 4739412
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacg 67  Q
    |||||||||||| |||||||||||| || || ||| | || ||||||| |||||||||||| |||||    
T  4739478 ccgcacaaagacgagaaatcaaaacaaacagagtcattcagagacgacgaaatcacaaaaacaaacg 4739412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 32314591 - 32314522
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggt-cgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    |||||||||||| |||||||||||| || || || ||| || |||||||||||||||||||| ||||||||    
T  32314591 ccgcacaaagacgagaaatcaaaacaaacagagttcgt-cagagacgacaaaatcacaaaaacaaacgaaa 32314522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 7072920 - 7072989
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||||  ||||||||||| || || ||||| || ||||||  |||||||||||| ||||||||    
T  7072920 ccgcacaaagacgggaaatcaaaacaaacagagtcgttcagagacgatgaaatcacaaaaacaaacgaaa 7072989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 12891091 - 12891160
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||||  ||||||||||| || || ||||| |  ||||||| |||||||||||| ||||||||    
T  12891091 ccgcacaaagacgggaaatcaaaacaaacagagtcgttccgagacgacgaaatcacaaaaacaaacgaaa 12891160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 13878979 - 13879047
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||||  ||||||||||| || || ||||| || ||||||| |||||||||||| ||||||||    
T  13878979 ccgcacaaagacgggaaatcaaaacaaacagagtcgttcagagacgac-aaatcacaaaaataaacgaaa 13879047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 14019104 - 14019172
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||||  ||||||||||| || || ||||| || ||||||| |||||||||||| ||||||||    
T  14019104 ccgcacaaagacgggaaatcaaaacaaacagagtcgttcagagacgac-aaatcacaaaaataaacgaaa 14019172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 17116378 - 17116443
Alignment:
Q  5 acaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    |||||||||  |||| ||||| | |||||| ||||||||||||| |||||||| ||| ||||||||    
T  17116378 acaaagacagaaaattaaaacaagtagggttgtgcaaagacgacgaaatcacataaacaaacgaaa 17116443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 31908788 - 31908857
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||||  ||||||||||| || |  ||||| |||||||||| |||||| ||||| ||||||||    
T  31908788 ccgcacaaagacgggaaatcaaaacaaacaaagtcgttcaaagacgacgaaatcagaaaaacaaacgaaa 31908857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 36868156 - 36868088
Alignment:
Q  2 cgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    |||||||||||  ||||||||||| || || ||||| || ||||||| ||||| |||||| ||||||||    
T  36868156 cgcacaaagacgggaaatcaaaacaaacagagtcgttcagagacgacgaaatcgcaaaaacaaacgaaa 36868088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 4921854 - 4921925
Alignment:
Q  2 cgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaataa 73  Q
    |||||||||||  ||||||||||| ||||| |||||||| |||||||||||||||||||| |||||||||||    
T  4921854 cgcacaaagacgggaaatcaaaacaaatagagtcgtgcagagacgacaaaatcacaaaaacaaacgaaataa 4921925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 29284900 - 29284841
Alignment:
Q  2 cgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaa 61  Q
    ||||||||||||| |||||||||| || |  |||||||||||||||| ||||||||||||    
T  29284900 cgcacaaagacaaaaaatcaaaacaaacaaagtcgtgcaaagacgacgaaatcacaaaaa 29284841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 3610321 - 3610383
Alignment:
Q  4 cacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaac 66  Q
    |||||| | ||||||||||||  | ||| |||||||||| |||||||||||||||||||||||    
T  3610321 cacaaataaaagaaatcaaaataagtagagtcgtgcaaacacgacaaaatcacaaaaagaaac 3610383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 23654396 - 23654327
Alignment:
Q  4 cacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaataa 73  Q
    |||||||||  ||||||||||| || || ||||| || ||||||| |||||||||||| |||||||||||    
T  23654396 cacaaagacgggaaatcaaaacaaacagagtcgttcagagacgacgaaatcacaaaaacaaacgaaataa 23654327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 14783143 - 14783212
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||||  ||||||||||| || || || || || ||||||| |||||||||||||||| ||||    
T  14783143 ccgcacaaagacgggaaatcaaaacaaacagagttgttcagagacgacgaaatcacaaaaagaaatgaaa 14783212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 19402784 - 19402849
Alignment:
Q  5 acaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||  ||||||||||| || || ||||| || ||||||| |||||||||||| ||||||||    
T  19402784 acaaagacgggaaatcaaaacaaacagagtcgttcagagacgacgaaatcacaaaaacaaacgaaa 19402849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 29927067 - 29927135
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||||  ||||||||||| || || |||||  | |||||||||||||||||||| ||||||||    
T  29927067 ccgcacaaagacgggaaatcaaaac-aacagagtcgtttagagacgacaaaatcacaaaaacaaacgaaa 29927135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 31937392 - 31937461
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||||| ||| ||||||| || || |||||  | ||||||| |||||||||||| ||||||||    
T  31937392 ccgcacaaagacaggaactcaaaacaaacagagtcgtttagagacgacgaaatcacaaaaacaaacgaaa 31937461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 20028706 - 20028742
Alignment:
Q  37 tgcaaagacgacaaaatcacaaaaagaaacgaaataa 73  Q
    |||||||||||| |||||||||||| |||||||||||    
T  20028706 tgcaaagacgacgaaatcacaaaaacaaacgaaataa 20028742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 40716335 - 40716267
Alignment:
Q  5 acaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaataa 73  Q
    ||||||||| ||||||||||||||||| |||||||||||||||| ||||| |||||| ||| |||||||    
T  40716335 acaaagacatgaaatcaaaactaatagagtcgtgcaaagacgacgaaatcgcaaaaacaaaggaaataa 40716267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 24520782 - 24520717
Alignment:
Q  5 acaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||| ||||||||||  ||||| ||||| |||||||||| |||||||||||| ||||||||    
T  24520782 acaaagacatgaaatcaaaataaatagagtcgtccaaagacgacgaaatcacaaaaataaacgaaa 24520717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 39610361 - 39610292
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||||  ||||||||||| || || ||| | ||||||||||||||||||||||| ||||||||    
T  39610361 ccgcacaaagacgggaaatcaaaacaaacagagtcattcaaagacgacaaaatcacaaaaacaaacgaaa 39610292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 32080736 - 32080803
Alignment:
Q  3 gcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||  ||||||||||| || || ||||| || |||||||||||||||||||| ||||||||    
T  32080736 gcacaaagacgtgaaatcaaaacaaacagagtcgttcagagacgacaaaatcacaaaaacaaacgaaa 32080803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 39429481 - 39429548
Alignment:
Q  3 gcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||||||||| ||||| || || |||||||| ||||||| |||||| ||||| ||||||||    
T  39429481 gcacaaagacaagaaattaaaacaaacagagtcgtgcagagacgacgaaatcaaaaaaacaaacgaaa 39429548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 22485114 - 22485045
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||||  ||||||||||| || || ||||| |||||| ||| |||||||||||| ||||||||    
T  22485114 ccgcacaaagacgggaaatcaaaacaaacagagtcgttcaaagatgacgaaatcacaaaaacaaacgaaa 22485045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 106016 - 106084
Alignment:
Q  2 cgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    |||||||||||   |||||||||  || || |||||||| |||||||||||||||||||| ||||||||    
T  106016 cgcacaaagacggaaaatcaaaataaacagagtcgtgcagagacgacaaaatcacaaaaacaaacgaaa 106084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 2147871 - 2147807
Alignment:
Q  6 caaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||| |||||||||||| || || |||||||| ||||||| |||||||||||| ||| ||||    
T  2147871 caaagacgagaaatcaaaacaaacagagtcgtgcagagacgacgaaatcacaaaaacaaatgaaa 2147807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 31270475 - 31270406
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||||  ||||||||||| || || ||||| || ||||||| |||| ||||||| ||||||||    
T  31270475 ccgcacaaagacgggaaatcaaaacaaacagagtcgttcagagacgacgaaattacaaaaacaaacgaaa 31270406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 33193822 - 33193782
Alignment:
Q  33 gtcgtgcaaagacgacaaaatcacaaaaagaaacgaaataa 73  Q
    |||||||||||||||  |||||||||||| |||||||||||    
T  33193822 gtcgtgcaaagacgatgaaatcacaaaaataaacgaaataa 33193782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 55125619 - 55125563
Alignment:
Q  5 acaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaa 61  Q
    |||||||||| |||||||||  || |  ||||||||||||||| |||||||||||||    
T  55125619 acaaagacaaaaaatcaaaataaacatagtcgtgcaaagacgataaaatcacaaaaa 55125563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 24825798 - 24825729
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||||  ||||||||||| || || |||||||||||||||| |||||||||||| ||||||||    
T  24825798 ccgcacaaagacgggaaatcaaaacaaacagagtcgtgcaaagacgacgaaatcacaaaaacaaacgaaa 24825729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 12717089 - 12717158
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    |||||||||||| |||||||||||| ||||| |||||||  ||||||  |||||||||||| ||||||||    
T  12717089 ccgcacaaagacgagaaatcaaaacaaatagagtcgtgctgagacgaagaaatcacaaaaacaaacgaaa 12717158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 29922986 - 29922917
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    |||||||||||| |||||||||||| || || ||||| || |||||||||||||||||||| | ||||||    
T  29922986 ccgcacaaagacgagaaatcaaaacaaacagagtcgttcagagacgacaaaatcacaaaaacagacgaaa 29922917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 28837211 - 28837145
Alignment:
Q  4 cacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    |||||||||  ||||||||||| || || |||||||| ||||||| |||||||||||| ||||||||    
T  28837211 cacaaagacgggaaatcaaaacaaacagcgtcgtgcagagacgacgaaatcacaaaaacaaacgaaa 28837145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 22757243 - 22757174
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||||  ||||||||||| || || ||||| || ||||||| |||||||||||| ||||||||    
T  22757243 ccgcacaaagacgggaaatcaaaacaaacagagtcgttcatagacgacgaaatcacaaaaacaaacgaaa 22757174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 26742435 - 26742504
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||||  |||||||||||  | || ||||| |||||||||||||||||| |||| ||||||||    
T  26742435 ccgcacaaagacgggaaatcaaaacatacagagtcgttcaaagacgacaaaatcacgaaaacaaacgaaa 26742504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 38944120 - 38944189
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||||  ||||||||||| || || ||||| || ||||||| |||||||||||| ||||||||    
T  38944120 ccgcacaaagacgggaaatcaaaacaaacagagtcgttcagagacgacgaaatcacaaaaacaaacgaaa 38944189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 43244353 - 43244422
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||||  ||||| ||||| || || ||||| || |||||||||||||||||||| ||||||||    
T  43244353 ccgcacaaagacgggaaattaaaacaaacagagtcgttcagagacgacaaaatcacaaaaacaaacgaaa 43244422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 35945963 - 35946035
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaataa 73  Q
    |||||||||||| | |||||||||| |  || ||||| ||||||| || |||||||||||| |||||||||||    
T  35945963 ccgcacaaagacgataaatcaaaacaagaagagtcgtacaaagacaacgaaatcacaaaaacaaacgaaataa 35946035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 52465382 - 52465422
Alignment:
Q  34 tcgtgcaaagacgacaaaatcacaaaaagaaacgaaataat 74  Q
    |||||||||||||||||||| ||||||| ||||||||||||    
T  52465382 tcgtgcaaagacgacaaaattacaaaaacaaacgaaataat 52465422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 5814482 - 5814427
Alignment:
Q  15 gaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||| || || |||||||| ||||||| |||||||||||| ||||||||    
T  5814482 gaaatcaaaacaaacagagtcgtgcagagacgacgaaatcacaaaaacaaacgaaa 5814427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 20887730 - 20887797
Alignment:
Q  3 gcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||  ||||||||||| || || ||||| || ||||||| |||||||||||| ||||||||    
T  20887730 gcacaaagacgggaaatcaaaacaaacagagtcgttcagagacgacgaaatcacaaaaacaaacgaaa 20887797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 626521 - 626590
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    |||||||||||| |||||||||||| |  || ||||| || ||| ||| |||||||||||| ||||||||    
T  626521 ccgcacaaagacgagaaatcaaaacaatcagagtcgttcacagaggacgaaatcacaaaaacaaacgaaa 626590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 7060465 - 7060404
Alignment:
Q  9 agacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    |||| |||||||||||  || || ||||| |||||||||| |||||||||||| ||||||||    
T  7060465 agacgagaaatcaaaagaaacagagtcgttcaaagacgacgaaatcacaaaaacaaacgaaa 7060404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 7083792 - 7083857
Alignment:
Q  5 acaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||  ||||||||||| || || ||||| || ||||||| |||||||||||| ||||||||    
T  7083792 acaaagacgggaaatcaaaacaaacagagtcgttcagagacgacgaaatcacaaaaacaaacgaaa 7083857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 20399875 - 20399944
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||||  ||||||||||| |  || ||||| || ||||||| |||||||||||| ||||||||    
T  20399875 ccgcacaaagacgggaaatcaaaacaagaagagtcgttcagagacgacgaaatcacaaaaataaacgaaa 20399944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 29268749 - 29268818
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||||  ||||||||||| || || || || || ||||||| |||||||||||| ||||||||    
T  29268749 ccgcacaaagacgggaaatcaaaacaaacagagttgttcagagacgacgaaatcacaaaaacaaacgaaa 29268818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 30202183 - 30202118
Alignment:
Q  5 acaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||  ||||||||||| || || ||||| || ||||||| |||||||||||| ||||||||    
T  30202183 acaaagacgggaaatcaaaacaaacagagtcgttcagagacgacgaaatcacaaaaacaaacgaaa 30202118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 43493259 - 43493324
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaac 66  Q
    ||||||||||||  ||||||||||| || || ||||| || ||||||| |||||||||||| ||||    
T  43493259 ccgcacaaagacgggaaatcaaaacaaacagagtcgttcagagacgacgaaatcacaaaaataaac 43493324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 44757014 - 44757083
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    |||||||||||| |||||||||||| || |  ||| |||| ||||||| |||||| ||||| ||||||||    
T  44757014 ccgcacaaagacgagaaatcaaaacaaacaaagtcatgcagagacgacgaaatcataaaaacaaacgaaa 44757083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 45351042 - 45351111
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||||  ||||||||||| || || || || || ||||||| |||||||||||| ||||||||    
T  45351042 ccgcacaaagacgggaaatcaaaacaaacagagttgttcagagacgacgaaatcacaaaaacaaacgaaa 45351111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 45360521 - 45360590
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||||  ||||||||||| || || || || || ||||||| |||||||||||| ||||||||    
T  45360521 ccgcacaaagacgggaaatcaaaacaaacagagttgttcagagacgacgaaatcacaaaaacaaacgaaa 45360590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 13965708 - 13965640
Alignment:
Q  2 cgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    |||||||||||  ||||||||||| |  || ||||| || ||||||| |||||||||||| ||||||||    
T  13965708 cgcacaaagacgggaaatcaaaacaatcagagtcgttcagagacgacgaaatcacaaaaacaaacgaaa 13965640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 24568685 - 24568757
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaataa 73  Q
    ||||||||||||  ||||||||||| ||  | ||||| || | ||||| |||||||||||| |||||||||||    
T  24568685 ccgcacaaagacgggaaatcaaaacaaacggagtcgttcagatacgacgaaatcacaaaaacaaacgaaataa 24568757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 12871770 - 12871701
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||||  ||||||||||| || || |||||||||||||||| |||||||||||| ||||||||    
T  12871770 ccgcacaaagacgggaaatcaaaacaaacagagtcgtgcaaagacgacgaaatcacaaaaacaaacgaaa 12871701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 28678104 - 28678171
Alignment:
Q  3 gcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    |||||||||| |||||||||||| || || ||||| |||| ||||| |||||||||||| ||||||||    
T  28678104 gcacaaagacgagaaatcaaaacaaacagagtcgttcaaatacgacgaaatcacaaaaacaaacgaaa 28678171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 29069815 - 29069886
Alignment:
Q  2 cgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaataa 73  Q
    ||||||||||||  |||||||||| || || |||||| ||||||||| |||||| ||||| |||||||||||    
T  29069815 cgcacaaagacataaaatcaaaacaaacagagtcgtgtaaagacgacgaaatcataaaaacaaacgaaataa 29069886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 25689815 - 25689884
Alignment:
Q  2 cgcacaaagac-aagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||| || |||||||||| || || ||| |||||||||||||| |||||||||| ||||||||    
T  25689815 cgcacaaagacgaaaaaatcaaaacaaacagagtcatgcaaagacgacaacatcacaaaaacaaacgaaa 25689884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 33487006 - 33487071
Alignment:
Q  5 acaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||| || |||||||||||| || || ||||| |||||||||| |||||||||||| ||||||||    
T  33487006 acaaatacgagaaatcaaaacaaacagagtcgttcaaagacgacgaaatcacaaaaacaaacgaaa 33487071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 42491042 - 42490973
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||||  ||||||||||| || || ||||| || ||||||| |||||||||||| ||||||||    
T  42491042 ccgcacaaagacgggaaatcaaaacaaacagagtcgtacagagacgacgaaatcacaaaaacaaacgaaa 42490973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 45193602 - 45193667
Alignment:
Q  5 acaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    |||||||| |||||||||||| ||||| || |   |||||||||||||||||||||| ||||||||    
T  45193602 acaaagacgagaaatcaaaacaaatagagtagattaaagacgacaaaatcacaaaaacaaacgaaa 45193667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 45750627 - 45750558
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    |||||||||||| | |||||||||| || |  ||||| |||||||||| |||||||||||| ||||||||    
T  45750627 ccgcacaaagacgataaatcaaaacaaacaaagtcgttcaaagacgacgaaatcacaaaaacaaacgaaa 45750558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 3232935 - 3232868
Alignment:
Q  3 gcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||| ||||||||||| || || ||||| || | ||||| |||||||||||| ||||||||    
T  3232935 gcacaaagacaggaaatcaaaacaaacagagtcgttcagaaacgacgaaatcacaaaaacaaacgaaa 3232868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 2513575 - 2513633
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaa 59  Q
    ||||||||||||   |||||||||| ||||| |||||| ||||||||| ||||||||||    
T  2513575 ccgcacaaagacggaaaatcaaaacaaatagagtcgtgaaaagacgacgaaatcacaaa 2513633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 8744114 - 8744171
Alignment:
Q  16 aaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaataa 73  Q
    |||||||||| ||||| ||||||||||||  ||| ||| ||||||| |||||||||||    
T  8744114 aaatcaaaacaaatagagtcgtgcaaagataacataattacaaaaataaacgaaataa 8744171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 18343762 - 18343694
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    |||||||||||| |||||||| ||| || || ||||| ||||||| || |||||||||||| ||||||||    
T  18343762 ccgcacaaagacgagaaatcagaacaaacagagtcgttcaaagac-acgaaatcacaaaaacaaacgaaa 18343694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 24114651 - 24114724
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaataat 74  Q
    |||||||||||| |||||||||||| || |  |||||| |||||| || |||||||||||| |||  |||||||    
T  24114651 ccgcacaaagacgagaaatcaaaacaaacaaagtcgtgtaaagacaacgaaatcacaaaaacaaataaaataat 24114724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 29205434 - 29205369
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaac 66  Q
    ||||||||||||  ||||||||||| || || ||||| || ||||||| |||||||||||| ||||    
T  29205434 ccgcacaaagacgtgaaatcaaaacaaacagagtcgttcagagacgacgaaatcacaaaaacaaac 29205369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 44517296 - 44517227
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    |||||||||||   ||||||||||| || || ||||| || ||||||| |||||||||||| ||||||||    
T  44517296 ccgcacaaagaagggaaatcaaaacaaacagagtcgttcagagacgacgaaatcacaaaaacaaacgaaa 44517227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 45425451 - 45425513
Alignment:
Q  6 caaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    |||||||||||||||||||  || || ||||||| |||||||| ||||||||||||  |||||||    
T  45425451 caaagacaagaaatcaaaa--aacagagtcgtgctaagacgacgaaatcacaaaaactaacgaaa 45425513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 1039874 - 1039933
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaa 60  Q
    |||||||||||| |||||||||||| ||||| ||||| || |||||||||||||||||||    
T  1039874 ccgcacaaagacgagaaatcaaaacaaatagagtcgttcagagacgacaaaatcacaaaa 1039933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 24791148 - 24791217
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    |||||||||||| |||||||||||| || || ||||| || ||||||| |||||||||||| ||||||||    
T  24791148 ccgcacaaagacgagaaatcaaaacaaacagagtcgttcagagacgacgaaatcacaaaaacaaacgaaa 24791217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 14600681 - 14600747
Alignment:
Q  4 cacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    |||||||||  ||||||||||| || || ||||| |||||||||| |||||||||||| ||||||||    
T  14600681 cacaaagacgggaaatcaaaacaaacagagtcgttcaaagacgacgaaatcacaaaaacaaacgaaa 14600747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 2025189 - 2025261
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaataa 73  Q
    |||||||||||| | |||||||||| || ||  |||| || ||||||| |||||||||||| |||||||||||    
T  2025189 ccgcacaaagacgaaaaatcaaaacaaacagaatcgttcagagacgacgaaatcacaaaaataaacgaaataa 2025261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 7579836 - 7579904
Alignment:
Q  2 cgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    |||||||||||  ||||||||||| || || ||||| || ||||||| |||||||||||| ||||||||    
T  7579836 cgcacaaagacgggaaatcaaaacaaacagagtcgttcagagacgacgaaatcacaaaaacaaacgaaa 7579904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 10338805 - 10338871
Alignment:
Q  4 cacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    |||||||||  ||||||||||| || |  ||||| |||||||||| |||||||||||| ||||||||    
T  10338805 cacaaagacgggaaatcaaaacaaacaaagtcgttcaaagacgacgaaatcacaaaaacaaacgaaa 10338871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 2234450 - 2234519
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    |||||||||||   ||||||||||| || || ||||| || ||||||| |||||||||||| ||||||||    
T  2234450 ccgcacaaagatgggaaatcaaaacaaacagagtcgttcagagacgacgaaatcacaaaaacaaacgaaa 2234519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 10148096 - 10148027
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    |||||||||||| |||||||||||| || || |||||  | |||||||| |||| |||||| ||||||||    
T  10148096 ccgcacaaagacgagaaatcaaaacaaacagagtcgtttagagacgacataatctcaaaaacaaacgaaa 10148027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 22787641 - 22787572
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||| ||||||||||||| || || ||||| || | |||||  ||||||||||| ||||||||    
T  22787641 ccgcacaaagataagaaatcaaaacaaacagagtcgttcagaaacgacggaatcacaaaaacaaacgaaa 22787572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 30026860 - 30026929
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||| ||||||  ||||||||||| || || ||||| || ||||||| |||||||||||| ||||||||    
T  30026860 ccgcagaaagacgggaaatcaaaacaaacagagtcgttcagagacgacgaaatcacaaaaacaaacgaaa 30026929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 31202603 - 31202538
Alignment:
Q  5 acaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||  ||||||||||| ||||| || || || ||||||| |||||||||||| ||||||||    
T  31202603 acaaagacgggaaatcaaaacaaatagagttgttcagagacgacgaaatcacaaaaacaaacgaaa 31202538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 31308297 - 31308228
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||||  ||||||||||| || || |||||  | ||||||| |||||||||||| ||||||||    
T  31308297 ccgcacaaagacgggaaatcaaaacaaacagagtcgtttagagacgacgaaatcacaaaaacaaacgaaa 31308228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 41361881 - 41361812
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||||  ||||||||||| || || |||||  | ||||||| |||||||||||| ||||||||    
T  41361881 ccgcacaaagacgggaaatcaaaacaaacagagtcgtttagagacgaccaaatcacaaaaacaaacgaaa 41361812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 31407729 - 31407797
Alignment:
Q  2 cgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    |||||||||||  ||||||||||| || || ||||| || ||||||| |||||| ||||| ||||||||    
T  31407729 cgcacaaagacgggaaatcaaaacaaacagagtcgttcagagacgacgaaatcataaaaacaaacgaaa 31407797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 39067670 - 39067738
Alignment:
Q  2 cgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    |||| ||||||  ||||||||||| || |  ||||| |||||||||| |||||||||||| ||||||||    
T  39067670 cgcataaagacgggaaatcaaaacaaacatagtcgttcaaagacgacgaaatcacaaaaacaaacgaaa 39067738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 27050437 - 27050507
Alignment:
Q  3 gcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaataa 73  Q
    |||||||||| |||||| ||||| || || ||| ||||||||||||||||||||||||| |||| ||||||    
T  27050437 gcacaaagactagaaattaaaacaaacagagtcatgcaaagacgacaaaatcacaaaaacaaacaaaataa 27050507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 1281109 - 1281178
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    |||||||||||| |||||||||||| || || ||||| || ||||||| |||||||||||| ||||||||    
T  1281109 ccgcacaaagacgagaaatcaaaacaaacagagtcgttcagagacgacgaaatcacaaaaacaaacgaaa 1281178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 3266537 - 3266468
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||||  ||||||||||| || || ||||| || |||||||||||||||||||| ||||||||    
T  3266537 ccgcacaaagacgggaaatcaaaacaaacagagtcgttcagagacgacaaaatcacaaaaataaacgaaa 3266468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 9785466 - 9785401
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaac 66  Q
    ||||||||||||  ||||||||||| ||||| ||||| || ||||||| |||||||||||| ||||    
T  9785466 ccgcacaaagacgggaaatcaaaacaaatagagtcgttcagagacgacgaaatcacaaaaataaac 9785401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 10094590 - 10094521
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||||  ||||||||||| || |  ||||| |||||||||| |||||||||||| ||||||||    
T  10094590 ccgcacaaagacgggaaatcaaaacaaacaaagtcgttcaaagacgacgaaatcacaaaaacaaacgaaa 10094521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 10574530 - 10574461
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||||  ||||||||||| || |  ||||| |||||||||| |||||||||||| ||||||||    
T  10574530 ccgcacaaagacgggaaatcaaaacaaacaaagtcgttcaaagacgacgaaatcacaaaaacaaacgaaa 10574461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 15017348 - 15017413
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaac 66  Q
    ||||||||||||||||||||||||| || || ||||| || |||| || |||||||||||| ||||    
T  15017348 ccgcacaaagacaagaaatcaaaacaaacagagtcgttcagagacaacgaaatcacaaaaacaaac 15017413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 15674584 - 15674653
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||||  ||||||||||| || |||||||| || ||| ||| |||||||||||| ||||||||    
T  15674584 ccgcacaaagacgggaaatcaaaacaaacagggtcgttcagagatgacgaaatcacaaaaacaaacgaaa 15674653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 41288107 - 41288038
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||||  ||||||||||| || || ||||| || ||||||||||||||| |||| ||||||||    
T  41288107 ccgcacaaagacgggaaatcaaaacaaacagtgtcgttcagagacgacaaaatcactaaaacaaacgaaa 41288038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 6496034 - 6495972
Alignment:
Q  8 aagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||| |||||||||||| || |  ||||| ||||||||||| ||||||||||| ||||||||    
T  6496034 aagacgagaaatcaaaacaaacaaagtcgtacaaagacgacagaatcacaaaaataaacgaaa 6495972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 28664899 - 28664953
Alignment:
Q  16 aaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    |||||||||| || || ||||| || |||||||||||||||||||| ||||||||    
T  28664899 aaatcaaaacaaacagagtcgttcagagacgacaaaatcacaaaaacaaacgaaa 28664953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 33476626 - 33476696
Alignment:
Q  3 gcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaataa 73  Q
    ||||||| || |||||||||||| || |  |||||||||||||||| |||||| ||||| ||||| |||||    
T  33476626 gcacaaatacgagaaatcaaaacaaaaaaagtcgtgcaaagacgacgaaatcataaaaacaaacggaataa 33476696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 11833168 - 11833099
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||| ||  ||||||||||| || ||||| || || ||||||| |||||||||||| ||||||||    
T  11833168 ccgcacaaaaacgggaaatcaaaacaaacagggttgtacagagacgacgaaatcacaaaaacaaacgaaa 11833099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 17473695 - 17473764
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||||  ||||||||||| || || ||| | || |||||||||||||||||||| ||| ||||    
T  17473695 ccgcacaaagacgggaaatcaaaacaaacagagtcattcagagacgacaaaatcacaaaaacaaatgaaa 17473764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 17579519 - 17579450
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||||  ||||||||||| || || ||| | || |||||||||||||||||||| ||| ||||    
T  17579519 ccgcacaaagacgggaaatcaaaacaaacagagtcattcagagacgacaaaatcacaaaaacaaatgaaa 17579450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 21990811 - 21990742
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||||  ||||||||||| || || ||||| || | ||||| |||||||||||| ||||||||    
T  21990811 ccgcacaaagacgggaaatcaaaacaaaaagagtcgttcagaaacgacgaaatcacaaaaacaaacgaaa 21990742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 36579284 - 36579349
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaac 66  Q
    |||||| |||||  ||||||||||| ||||| ||||| || ||||||| |||||||||||| ||||    
T  36579284 ccgcactaagacgggaaatcaaaacaaatagagtcgttcagagacgacgaaatcacaaaaacaaac 36579349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 37376003 - 37376072
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    |||||||||||| |||||||||||| || || ||| | |  |||||||||||||||| ||| ||||||||    
T  37376003 ccgcacaaagacgagaaatcaaaacaaacagagtcattctgagacgacaaaatcacataaacaaacgaaa 37376072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 39532947 - 39533012
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaac 66  Q
    |||||||||||   |||||||||||||| || ||||| |||||||||| ||||||| |||| ||||    
T  39532947 ccgcacaaagatgggaaatcaaaactaacagagtcgttcaaagacgacgaaatcacgaaaacaaac 39533012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 43998949 - 43998990
Alignment:
Q  33 gtcgtgcaaagacgacaaaatcacaaaaagaaacgaaataat 74  Q
    |||||||||||||||| |||||||||||| |||| |||||||    
T  43998949 gtcgtgcaaagacgacgaaatcacaaaaacaaacaaaataat 43998990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 46026001 - 46026070
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||||  ||||||||||| || || ||||| || ||||||| |||| ||||||| ||||||||    
T  46026001 ccgcacaaagacgggaaatcaaaacaaacagagtcgttcagagacgacgaaataacaaaaacaaacgaaa 46026070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 36253079 - 36253015
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaa 65  Q
    ||||||||||||  ||||| ||||| || || ||||| || ||||||| ||||||||||||||||    
T  36253079 ccgcacaaagacgggaaattaaaacaaacagagtcgttcagagacgacgaaatcacaaaaagaaa 36253015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 42603742 - 42603810
Alignment:
Q  2 cgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    |||||||||||  ||||||||||| || || |||||  | ||||||| |||||||||||| ||||||||    
T  42603742 cgcacaaagacgggaaatcaaaacaaacagagtcgtttatagacgacgaaatcacaaaaacaaacgaaa 42603810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 45482212 - 45482144
Alignment:
Q  2 cgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    |||||||||||  ||||||||||| || || ||||| || ||||||| |||||| ||||| ||||||||    
T  45482212 cgcacaaagacgggaaatcaaaacaaacagagtcgttcagagacgacgaaatcataaaaacaaacgaaa 45482144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 48304369 - 48304425
Alignment:
Q  5 acaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaa 61  Q
    ||||||||  ||||||||||| || || ||||| |||||||||| ||||||||||||    
T  48304369 acaaagacgggaaatcaaaacaaacagagtcgttcaaagacgacgaaatcacaaaaa 48304425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1379 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold1379
Description:

Target: scaffold1379; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 1058 - 1127
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||||  ||||||||||| || || |||||||| ||||||| |||||||||||| ||||||||    
T  1058 ccgcacaaagacgggaaatcaaaacaaacagagtcgtgcagagacgacgaaatcacaaaaacaaacgaaa 1127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1379; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 124 - 59
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaac 66  Q
    ||||||||||||  ||||||||||| || || ||||| || ||||||| |||||||||||| ||||    
T  124 ccgcacaaagacgggaaatcaaaacaaacagagtcgttcagagacgacgaaatcacaaaaataaac 59  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 18653931 - 18653862
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||||  ||||||||||| || || |||||||| ||||||| |||||||||||| ||||||||    
T  18653931 ccgcacaaagacgggaaatcaaaacaaacagagtcgtgcagagacgacgaaatcacaaaaacaaacgaaa 18653862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 35275961 - 35276029
Alignment:
Q  3 gcacaaagacaagaaatcaaaactaat-agggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||   |||||||||| ||| || ||||||||||||||||||||||||||||| ||||||||    
T  35275961 gcacaaagacggtaaatcaaaacaaattagagtcgtgcaaagacgacaaaatcacaaaaacaaacgaaa 35276029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 17096211 - 17096280
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||||   |||||||||| || || ||||| || |||||||||||||||||||| ||||||||    
T  17096211 ccgcacaaagacggaaaatcaaaacaaacagagtcgttcagagacgacaaaatcacaaaaacaaacgaaa 17096280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 17331477 - 17331408
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||||  ||||||||||| || || ||||| || ||||||| |||||||||||| ||||||||    
T  17331477 ccgcacaaagacgggaaatcaaaacaaacagagtcgttcagagacgacgaaatcacaaaaacaaacgaaa 17331408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 34431209 - 34431140
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||||  ||||||||||| || || ||||| |||||||||| |||||||||||  ||||||||    
T  34431209 ccgcacaaagacgggaaatcaaaacaaacagagtcgttcaaagacgacgaaatcacaaaatcaaacgaaa 34431140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 32347686 - 32347758
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaataa 73  Q
    ||||||||||||  ||||||||||| || || ||||| || | ||||| |||||||||||| |||||||||||    
T  32347686 ccgcacaaagacgggaaatcaaaaccaacagagtcgttcagaaacgacgaaatcacaaaaacaaacgaaataa 32347758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 23882088 - 23882155
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacga 68  Q
    ||||| |||||| |||||| ||||| || |||||||| || ||||||| |||||||||||| ||||||    
T  23882088 ccgcataaagacgagaaataaaaacaaacagggtcgttcagagacgacgaaatcacaaaaacaaacga 23882155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 33164442 - 33164509
Alignment:
Q  3 gcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||  ||||||||||| || || ||||| || ||||||| |||||||||||| ||||||||    
T  33164442 gcacaaagacgggaaatcaaaacaaacagagtcgttcagagacgacgaaatcacaaaaacaaacgaaa 33164509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 12891825 - 12891756
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||||  |||||||| || || || |||||||| |||| || |||||||||||| ||||||||    
T  12891825 ccgcacaaagacgtgaaatcaatacaaacagagtcgtgcagagacaacgaaatcacaaaaacaaacgaaa 12891756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 17699702 - 17699633
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    |||| |||||||| ||||||||||| ||||  ||| | || ||||||| |||||||||||| ||||||||    
T  17699702 ccgcgcaaagacaggaaatcaaaacaaatatagtcattcagagacgacgaaatcacaaaaacaaacgaaa 17699633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 27241213 - 27241144
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||||  ||||||||||  || | |||||| |||||||||| |||| ||||||| ||||||||    
T  27241213 ccgcacaaagacgggaaatcaaaataaacaaggtcgttcaaagacgacgaaattacaaaaacaaacgaaa 27241144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 29097938 - 29097873
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaac 66  Q
    |||||||||||   ||||||||||| || || ||||| |||||||||| |||||||||||| ||||    
T  29097938 ccgcacaaagatgggaaatcaaaacaaacagagtcgttcaaagacgacgaaatcacaaaaacaaac 29097873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 39179800 - 39179869
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    |||||||||||   ||||||||||| || || ||||| || ||||||| |||||||||||| ||||||||    
T  39179800 ccgcacaaagatgggaaatcaaaacaaacagagtcgttcagagacgacgaaatcacaaaaacaaacgaaa 39179869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 178076 - 178147
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgc--aaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    |||||||||| || ||||||||||| || || |||||||  | ||||||| |||||||||||| ||||||||    
T  178076 ccgcacaaagccaggaaatcaaaacaaacagagtcgtgcgcagagacgacgaaatcacaaaaacaaacgaaa 178147  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 585921 - 585885
Alignment:
Q  37 tgcaaagacgacaaaatcacaaaaagaaacgaaataa 73  Q
    |||||||||||| |||||||||||| |||||||||||    
T  585921 tgcaaagacgacgaaatcacaaaaacaaacgaaataa 585885  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 32309311 - 32309243
Alignment:
Q  2 cgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    |||||||| || |||||||||||| ||  | |||||||||||||||| |||| ||||||| ||| ||||    
T  32309311 cgcacaaatacgagaaatcaaaacaaactgagtcgtgcaaagacgacgaaattacaaaaacaaaagaaa 32309243  T

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Target: scaffold0294 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 4039 - 4108
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||||  ||||||||||| || |  ||||| |||||||||| |||||||||||| ||||||||    
T  4039 ccgcacaaagacgggaaatcaaaacaaacaaagtcgttcaaagacgacgaaatcacaaaaacaaacgaaa 4108  T

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Target: scaffold0056 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 74313 - 74244
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    ||||||||||||  ||||||||||| || |  ||||| ||||||||| ||||||||||||| ||||||||    
T  74313 ccgcacaaagacgggaaatcaaaacaaacaaagtcgttcaaagacgaaaaaatcacaaaaacaaacgaaa 74244  T

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Target: scaffold0536 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 3050 - 2982
Alignment:
Q  2 cgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    |||||||||||  ||||||||||| || || ||| | || |||||||||||||||||||| ||||||||    
T  3050 cgcacaaagacgggaaatcaaaacaaacagagtcattcatagacgacaaaatcacaaaaacaaacgaaa 2982  T

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Target: scaffold0321 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 7096 - 7165
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaacgaaa 70  Q
    |||||||||||| |||||||||||| ||  | |||||  | ||||||| |||||||||||| ||||||||    
T  7096 ccgcacaaagacgagaaatcaaaacaaaccgagtcgtttatagacgacgaaatcacaaaaacaaacgaaa 7165  T

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Target: scaffold0121 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 13217 - 13282
Alignment:
Q  1 ccgcacaaagacaagaaatcaaaactaatagggtcgtgcaaagacgacaaaatcacaaaaagaaac 66  Q
    ||||||||||||  ||||||||||| || || ||||| || ||||||| |||||||||||| ||||    
T  13217 ccgcacaaagacgggaaatcaaaacaaacagagtcgttcagagacgacgaaatcacaaaaacaaac 13282  T

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