View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14010_high_5 (Length: 455)
Name: NF14010_high_5
Description: NF14010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14010_high_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 182; Significance: 3e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 134 - 315
Target Start/End: Original strand, 17131780 - 17131961
Alignment:
| Q |
134 |
agctccgaattttttccaaaagttcatttctatagcttctcgtagaagctcaatctattcaattttgtacattgaacaaaagctacttcttggggtaaat |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17131780 |
agctccgaattttttccaaaagttcatttctatagcttctcgtagaagctcaatctattcaattttgtacattgaacaaaagctacttcttggggtaaat |
17131879 |
T |
|
| Q |
234 |
agctttattagaaatgtgtttggccctactttctccttataaggagaagagaagcccaaaaaagcttggccaaacaagctct |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17131880 |
agctttattagaaatgtgtttggccctactttctccttataaggagaagagaagcccaaaaaagcttggccaaacaagctct |
17131961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 133 - 317
Target Start/End: Complemental strand, 44504479 - 44504295
Alignment:
| Q |
133 |
aagctccgaattttttccaaaagttcatttctatagcttctcgtagaagctcaatctattcaattttgtacattgaacaaaagctacttcttggggtaaa |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44504479 |
aagctccgaattttttccaaaagttcatttctatagcttctcgtagaagctcaatctattcaattttgtacattgaacaaaagctacttcttggggtaaa |
44504380 |
T |
|
| Q |
233 |
tagctttattagaaatgtgtttggccctactttctccttataaggagaagagaagcccaaaaaagcttggccaaacaagctctta |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
44504379 |
tagctttattagaaatgtgtttggccctactttctccttataaggagaagagaagcccaaaaaagcttagccaaacaagctctta |
44504295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 133 - 307
Target Start/End: Original strand, 11898914 - 11899088
Alignment:
| Q |
133 |
aagctccgaattttttccaaaagttcatttctatagcttctcgtagaagctcaatctattcaattttgtacattgaacaaaagctacttcttggggtaaa |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
11898914 |
aagctccgaattttttccaaaagttcatttctatagcttctcgtagaagctcaatctattcaattttgtacattgaacaaaagctacttcttaggataaa |
11899013 |
T |
|
| Q |
233 |
tagctttattagaaatgtgtttggccctactttctccttataaggagaagagaagcccaaaaaagcttggccaaa |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11899014 |
tagctttattagaaatgtgtttggccctactttctccttataaggagaagagaagcccaaaaaagcttggccaaa |
11899088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 167; Significance: 3e-89; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 133 - 307
Target Start/End: Original strand, 9789893 - 9790067
Alignment:
| Q |
133 |
aagctccgaattttttccaaaagttcatttctatagcttctcgtagaagctcaatctattcaattttgtacattgaacaaaagctacttcttggggtaaa |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
9789893 |
aagctccgaattttttccaaaagttcatttctatagcttctcgtagaagctcaatctattcaattttgtacattgaacaaaagctacttcttaggataaa |
9789992 |
T |
|
| Q |
233 |
tagctttattagaaatgtgtttggccctactttctccttataaggagaagagaagcccaaaaaagcttggccaaa |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9789993 |
tagctttattagaaatgtgtttggccctactttctccttataaggagaagagaagcccaaaaaagcttggccaaa |
9790067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 133 - 315
Target Start/End: Complemental strand, 3586614 - 3586432
Alignment:
| Q |
133 |
aagctccgaattttttccaaaagttcatttctatagcttctcgtagaagctcaatctattcaattttgtacattgaacaaaagctacttcttggggtaaa |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
3586614 |
aagctccgaattttttccaaaagttcatttctacagcttctagtagaagctcaatttattcaattttgtacattgaacaaaagctaattcttcgggtaaa |
3586515 |
T |
|
| Q |
233 |
tagctttattagaaatgtgtttggccctactttctccttataaggagaagagaagcccaaaaaagcttggccaaacaagctct |
315 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3586514 |
tagctttattaaaaatgtgtttggccctactttctccttataaggagaagagaagcccaaaaaagcttggccaaacaagctct |
3586432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 287
Target Start/End: Complemental strand, 25704832 - 25704777
Alignment:
| Q |
231 |
aatagctttattagaaatgtgtttggccctactttctccttataaggagaagagaag |
287 |
Q |
| |
|
|||| |||||||| || ||||||||||||||| ||||||||| ||| |||||||||| |
|
|
| T |
25704832 |
aataactttattaaaattgtgtttggccctac-ttctccttaaaagtagaagagaag |
25704777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 165; Significance: 4e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 133 - 317
Target Start/End: Complemental strand, 31678272 - 31678088
Alignment:
| Q |
133 |
aagctccgaattttttccaaaagttcatttctatagcttctcgtagaagctcaatctattcaattttgtacattgaacaaaagctacttcttggggtaaa |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
31678272 |
aagctccgaattttttccaaaagttcatttctacagcttcttgtagaagctcaatctattcaattttgtacattaaacaaaagctacttcttcgggtaaa |
31678173 |
T |
|
| Q |
233 |
tagctttattagaaatgtgtttggccctactttctccttataaggagaagagaagcccaaaaaagcttggccaaacaagctctta |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
31678172 |
tagctttattagaaatgtgtttggccctactttctccttataaggagaatagaagcccaaaaaagcttggccaaacaagctctta |
31678088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 110; Significance: 3e-55; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 314 - 442
Target Start/End: Complemental strand, 32601392 - 32601263
Alignment:
| Q |
314 |
cttattttctttcatccaaccgaaagtttgaaatcccctacacctaagctatttttctgctgttagtaaggtttccttgatctaatttgtttctgtgatg |
413 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
32601392 |
cttattttctttcatccaactgaaagtttgaaatcccctacacctaagctatttttctgctgttagtaaggtttccttgatctaatttgtttatgtgatg |
32601293 |
T |
|
| Q |
414 |
tgcac-tttgactttgcattatttacattg |
442 |
Q |
| |
|
||||| ||||||||||||||||| |||||| |
|
|
| T |
32601292 |
tgcacgtttgactttgcattattcacattg |
32601263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 32601512 - 32601392
Alignment:
| Q |
12 |
atgaactttgatagtagtatatgcat--gtggttagaaaattttgtttaacagagaagtcatatatggaaattcacttgaccttatggtaggttcttgtc |
109 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32601512 |
atgaactttgatagtagtatatgcatatgtggttagaaaattttgtttaacagagaagtcatatatggaaattcacttgaccttatggtaggttcttgtc |
32601413 |
T |
|
| Q |
110 |
caatgggttggtgaggttgcc |
130 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
32601412 |
caatgggttggtgaggttgcc |
32601392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 314 - 442
Target Start/End: Complemental strand, 32596805 - 32596677
Alignment:
| Q |
314 |
cttattttctttcatccaaccgaaagtttgaaatcccctacacctaagctatttttctgctgttagtaaggtttccttgatctaatttgtttctgtgatg |
413 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||| ||||||| ||||||||||||| |||||||| |||||||||||||| |||||||| ||||||| |
|
|
| T |
32596805 |
cttattttctttcagccaactcaaagtttgaaatcccttacacctgagctatttttctgttgttagtatggtttccttgatctcatttgtttgtgtgatg |
32596706 |
T |
|
| Q |
414 |
tgcactttgactttgcattatttacattg |
442 |
Q |
| |
|
| |||||| || ||||||||| |||||| |
|
|
| T |
32596705 |
tccactttagctatgcattattcacattg |
32596677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 12 - 126
Target Start/End: Complemental strand, 32596925 - 32596809
Alignment:
| Q |
12 |
atgaactttgatagtagtatatgcat--gtggttagaaaattttgtttaacagagaagtcatatatggaaattcacttgaccttatggtaggttcttgtc |
109 |
Q |
| |
|
|||||||| || ||||||||| |||| ||||||||||| |||||||||| ||||||| ||||| ||||||||| ||||| ||||| | | |||||||| |
|
|
| T |
32596925 |
atgaacttagacagtagtataagcatatgtggttagaaatttttgtttaatagagaagccatatgtggaaattctcttgatcttattgcaacttcttgtc |
32596826 |
T |
|
| Q |
110 |
caatgggttggtgaggt |
126 |
Q |
| |
|
|||||| ||||| |||| |
|
|
| T |
32596825 |
caatggtttggttaggt |
32596809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University