View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14010_low_11 (Length: 325)
Name: NF14010_low_11
Description: NF14010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14010_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 9 - 310
Target Start/End: Complemental strand, 44267937 - 44267649
Alignment:
| Q |
9 |
agcagagaggtatggttttgttttgttgcacacatttatctcttctaatctaattttaatttaaacatttataatgttctctttttgaacaatgttatgt |
108 |
Q |
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| T |
44267937 |
agcagagaggtatggttttgttttgttgcacacatttatctcttctaatctaattttaatttaaacatttataatgttctctttttgaacaatgttatg- |
44267839 |
T |
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| Q |
109 |
tatgcaggtggtaaataaataaagaatgttacgtggatagtaataggattgaacatttgtccctgcttttctctggtaaattaattatttgtgttgtggt |
208 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44267838 |
----caggtggtaaataaa----gaatgttacgtggatagtaataggattgaacatttgtccctgcttttctctggtaaattaattatttgtgttttggt |
44267747 |
T |
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| Q |
209 |
ggtccatatttccctt-ttttgtattgaatactttgtaagtttccagcacaattcccttctataaagattgccttgccggtgaaggtatatatagataga |
307 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
44267746 |
ggtccatatttccctttttttgtattgaatactttgtaagtttccagcacaattcccttctataaaga-----ttgccggtgaaggtatatatagataga |
44267652 |
T |
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