View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14010_low_12 (Length: 299)
Name: NF14010_low_12
Description: NF14010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14010_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 39238446 - 39238728
Alignment:
| Q |
1 |
gaagttaagtaggcttattactgcaatgaatgcataataatagtcaaagtgggagacgtttacattatccaaaatccaacctttgcgaccatgtctttgg |
100 |
Q |
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| T |
39238446 |
gaagttaagtaggcttattactgcaatgaatgcataataatagtcaaagtgggagacgtttacattatccaaaatccaacctttgcgaccatgtctttgg |
39238545 |
T |
|
| Q |
101 |
gtgatatcagcaacagctgatagaaagaatgtactgagaaaacctcctagaccatatgaggctgtggagcatgctgttccgagactcttcatggtttctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39238546 |
gtgatatcagcaacagctgatagaaagaatgtactgagaaaacctcctagaccatatgaggctgtggagcatgctgttccgagactcttcatggtttctg |
39238645 |
T |
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| Q |
201 |
gcgcttgatcgtagaagaactccatcttggcaacttcgacgaagttatcagcaatccctgacaaggcaaactgaggtaggagg |
283 |
Q |
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| T |
39238646 |
gcgcttgatcgtagaagaactccatcttggcaacttcgacgaagttatcagcaatccctgacaaggcaaactgagggaggagg |
39238728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 51 - 282
Target Start/End: Original strand, 39193476 - 39193707
Alignment:
| Q |
51 |
gggagacgtttacattatccaaaatccaacctttgcgaccatgtctttgggtgatatcagcaacagctgatagaaagaatgtactgagaaaacctcctag |
150 |
Q |
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| T |
39193476 |
gggagatgtttaggttatccaaaacccaacctttgtgaccatgtctctgagtgatattagcaacaactgaaagaaggaaagtacttagaaaacttcctaa |
39193575 |
T |
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| Q |
151 |
accatatgaggctgtggagcatgctgttccgagactcttcatggtttctggcgcttgatcgtagaagaactccatcttggcaacttcgacgaagttatca |
250 |
Q |
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| T |
39193576 |
acccaagctggttgtaaaatatgatgttccgagacttttcatgccttctggtgcttgatcatagaagaactctaacttggcaatttccacgaaggtatta |
39193675 |
T |
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| Q |
251 |
gcaatccctgacaaggcaaactgaggtaggag |
282 |
Q |
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| T |
39193676 |
gcaatccctcccagggcaaactgagggaggag |
39193707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 74 - 279
Target Start/End: Original strand, 39176778 - 39176983
Alignment:
| Q |
74 |
atccaacctttgcgaccatgtctttgggtgatatcagcaacagctgatagaaagaatgtactgagaaaacctcctagaccatatgaggctgtggagcatg |
173 |
Q |
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| T |
39176778 |
atccatcccttgtgaccatgtctttgggtgatattagcaacagcagacagaagaacagtactgagaaagcttcctaaacctaagctggttgtgaaatacg |
39176877 |
T |
|
| Q |
174 |
ctgttccgagactcttcatggtttctggcgcttgatcgtagaagaactccatcttggcaacttcgacgaagttatcagcaatccctgacaaggcaaactg |
273 |
Q |
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| T |
39176878 |
ctgttccgagacttttcatgccttctggtgcttgatcatagaagatttccatcttggcaatatcaacgaagttatcagcaacccctgtcaaggcaaactg |
39176977 |
T |
|
| Q |
274 |
aggtag |
279 |
Q |
| |
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||||| |
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| T |
39176978 |
gggtag |
39176983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 65 - 282
Target Start/End: Original strand, 39222843 - 39223060
Alignment:
| Q |
65 |
ttatccaaaatccaacctttgcgaccatgtctttgggtgatatcagcaacagctgatagaaagaatgtactgagaaaacctcctagaccatatgaggctg |
164 |
Q |
| |
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|||||||||| |||||||||| |||||||||| |||||||| | ||| || ||| |||| ||| ||||| ||||||| ||||| ||| | || || |
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| T |
39222843 |
ttatccaaaacccaacctttgtgaccatgtctctgggtgattttagcgacgattgaaagaaggaaagtacttagaaaacttcctaaacccaagctggttg |
39222942 |
T |
|
| Q |
165 |
tggagcatgctgttccgagactcttcatggtttctggcgcttgatcgtagaagaactccatcttggcaacttcgacgaagttatcagcaatccctgacaa |
264 |
Q |
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| | ||| |||||||||||| |||||| |||||| |||||||| ||||||||||| | |||||||| ||| || ||||||||||||||||| | ||| |
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| T |
39222943 |
taaaatatgatgttccgagacttttcatgccttctggtgcttgatcatagaagaactctaacttggcaatttcaacaaagttatcagcaatcccagccaa |
39223042 |
T |
|
| Q |
265 |
ggcaaactgaggtaggag |
282 |
Q |
| |
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|||||||||||| ||||| |
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| T |
39223043 |
ggcaaactgagggaggag |
39223060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 8 - 260
Target Start/End: Original strand, 39256422 - 39256674
Alignment:
| Q |
8 |
agtaggcttattactgcaatgaatgcataataatagtcaaagtgggagacgtttacattatccaaaatccaacctttgcgaccatgtctttgggtgatat |
107 |
Q |
| |
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|||| ||||| |||| | ||||| |||||||| || || || | |||| ||||| ||||| |||||||||||||||| ||||||||||||| ||||||| |
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| T |
39256422 |
agtaagcttaatactaccatgaaagcataatagtaatctaaacgagagatgtttagattattcaaaatccaacctttgtgaccatgtctttgagtgatat |
39256521 |
T |
|
| Q |
108 |
cagcaacagctgatagaaagaatgtactgagaaaacctcctagaccatatgaggctgtggagcatgctgttccgagactcttcatggtttctggcgcttg |
207 |
Q |
| |
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||||||||| ||| |||| ||| | ||| | ||||||||| | ||| | | |||||| || || ||| ||||| |||||| |||||| ||||| |
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| T |
39256522 |
cagcaacagttgacagaatgaaggcactaacaaaacctcccaaacccaagcttgttgtggaaagtgatgctccaagacttttcatgccttctggtgcttg |
39256621 |
T |
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| Q |
208 |
atcgtagaagaactccatcttggcaacttcgacgaagttatcagcaatccctg |
260 |
Q |
| |
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||| || || ||||||||||| |||| ||| || ||| ||||||||| ||||| |
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| T |
39256622 |
atcataaaaaaactccatcttagcaatttcaacaaagctatcagcaacccctg |
39256674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 15755847 - 15755797
Alignment:
| Q |
175 |
tgttccgagactcttcatggtttctggcgcttgatcgtagaagaactccat |
225 |
Q |
| |
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|||||| |||||||||||| ||||||| |||||||| ||||| |||||||| |
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| T |
15755847 |
tgttccaagactcttcatgctttctggtgcttgatcatagaaaaactccat |
15755797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 15737746 - 15737706
Alignment:
| Q |
182 |
agactcttcatggtttctggcgcttgatcgtagaagaactc |
222 |
Q |
| |
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|||||||||||| ||||||| |||||||| ||||||||||| |
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| T |
15737746 |
agactcttcatgctttctggagcttgatcatagaagaactc |
15737706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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