View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14010_low_13 (Length: 289)
Name: NF14010_low_13
Description: NF14010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14010_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 56069502 - 56069644
Alignment:
| Q |
1 |
ttacagcagcactttcgatatctttttggttgacatcagggttgtagccaagacccaagacgtgccaggatcggttcagcgggaaagtatgtttccagaa |
100 |
Q |
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| T |
56069502 |
ttacagcagcactttcgatatctttttggttgacatcagggttgtagccaagacccaagacgtgccaggatcggttcagcgggaaagtatgtttccagaa |
56069601 |
T |
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| Q |
101 |
tgtcataagaccaggtggcagtgttcctaatttccataattgt |
143 |
Q |
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| T |
56069602 |
tgtcataagaccaggtggcagtgttcctaatttccataattgt |
56069644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 144 - 280
Target Start/End: Original strand, 56069678 - 56069810
Alignment:
| Q |
144 |
ggaaacatcgtcgatgaaattggaaagaaacgagaaattaacagcagatgcatttaactcaattttgtcaagttttggaaaagtaaattaactaaagtgt |
243 |
Q |
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| T |
56069678 |
ggaaaaatcgtcgatgaaattggaaagaaacgagaaattaacagcagatgcatttaactcaattttgtcaagttttggaaaagtaaat----taaagtgt |
56069773 |
T |
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| Q |
244 |
gcttaccagtttctgccatttgtggtacacctctgtg |
280 |
Q |
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| T |
56069774 |
gcttaccagtttctgccatttgtggtacacctctgtg |
56069810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 38398837 - 38398695
Alignment:
| Q |
1 |
ttacagcagcactttcgatatctttttggttgacatcagggttgtagccaagacccaagacgtgccaggatcggttcagcgggaaagtatgtttccagaa |
100 |
Q |
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| T |
38398837 |
ttacagcagccctttcaatatctttttggttgacattggggttgtagccaagacctaagacatgccaagatcggttcagcgggaacgtgcgtttccagaa |
38398738 |
T |
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| Q |
101 |
tgtcataagaccaggtggcagtgttcctaatttccataattgt |
143 |
Q |
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| T |
38398737 |
tgttataagaccaggtggcagtgttcctaacttccatagttgt |
38398695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 280
Target Start/End: Complemental strand, 38398594 - 38398508
Alignment:
| Q |
189 |
agatgcatttaactcaattttgtcaagttttggaaaagtaaattaactaaagtgtgcttaccagtttctgccatttgtggtacacctctgtg |
280 |
Q |
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| T |
38398594 |
agatgcatttcactcaattttgtgatgttttggaaaagtagat----taaagtgt-cttaccagcttctgccaattgtggtacacctctgtg |
38398508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 10171131 - 10171013
Alignment:
| Q |
18 |
atatctttttggttgacatcagggttgtagccaagacccaagacgtgccaggatcggttcagcgggaaagtatgtttccagaatgtcataagaccaggtg |
117 |
Q |
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| T |
10171131 |
atatctttttggttgacgttgggattgtagccaagacccaacacatgccacgctttgttcagtgggaaagtgcgtttccagaaggttatgagacctggtg |
10171032 |
T |
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| Q |
118 |
gcagtgttcctaatttcca |
136 |
Q |
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| T |
10171031 |
gcagtgttcctaacttcca |
10171013 |
T |
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