View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14010_low_16 (Length: 239)
Name: NF14010_low_16
Description: NF14010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14010_low_16 |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 13949357 - 13949136
Alignment:
| Q |
18 |
attatcagaatcaagatgaaccttcgtaattttttaacaaaaactacattttaaagtttcacgaaatcatagtactatcgtaattttatcaaatttacgc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
13949357 |
attatcagaatcaagatgaaccttcgtaattttttaacaaaaactacattttaaagtttcacgaaatcatagtactatcataattttatcaaatttacgc |
13949258 |
T |
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| Q |
118 |
caatataaaaatatacctagtcacgaaaaccttgacnnnnnnntgtgtctttgttagtgaagtaaatacctgtttgcattcaggagcagcacaactaaca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13949257 |
caatataaaaatatacctagtcacgaaaaccttgacaaaaaaatgtgtctttgttagtgaagtaaatacctgtttgcattcaggagcagcacaactaaca |
13949158 |
T |
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| Q |
218 |
ttcttaaatgtagttgattttt |
239 |
Q |
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|||||||||||||||||||||| |
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| T |
13949157 |
ttcttaaatgtagttgattttt |
13949136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 4038585 - 4038806
Alignment:
| Q |
18 |
attatcagaatcaagatgaaccttcgtaattttttaacaaaaactacattttaaagtttcacgaaatcatagtactatcgtaattttatcaaatttacgc |
117 |
Q |
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|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | || |
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| T |
4038585 |
attaccagaattaagatgaaccttcgtaattttttaacaaaaactacattttaaagtttcacgaaatcatagtactatcataattttatcaaatgcaagc |
4038684 |
T |
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| Q |
118 |
caatataaaaatatacctagtcacgaaaaccttgacnnnnnnntgtgtctttgttagtgaagtaaatacctgtttgcattcaggagcagcacaactaaca |
217 |
Q |
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| T |
4038685 |
caatataaaaatatacctagtcacgaaaaccatgacaaaaaaatgtgtctttgttagtgaagtaaatacctgtttgcattcaggagcagcacaactaaca |
4038784 |
T |
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| Q |
218 |
ttcttaaatgtagttgattttt |
239 |
Q |
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|||||||||||||||||||||| |
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| T |
4038785 |
ttcttaaatgtagttgattttt |
4038806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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