View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14010_low_2 (Length: 575)
Name: NF14010_low_2
Description: NF14010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14010_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 493; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 15 - 560
Target Start/End: Complemental strand, 47101564 - 47101018
Alignment:
| Q |
15 |
agaatggaaattgatccctagcacttagggatagaattatagacaaatatatagtttttcttggtaattttgttggtcannnnnnnnnn-acaagtgttg |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
47101564 |
agaatggaaattgatccctagcacttagggatagaattatagacaaatatatagtttttcttggtaattttgttggtcttttttttttttactagtgttg |
47101465 |
T |
|
| Q |
114 |
ttttgtatgtaatttattaagtttgtaattatttgatttgaaataggaagagaagggtgtggctaggaacatttgaaacagcagaagaagcagcaagagc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47101464 |
ttttgtatgtaatttattaagtttgtaattatttgatttgaaataggaagagaagggtgtggctaggaacatttgaaacagcagaagaagcagcaagagc |
47101365 |
T |
|
| Q |
214 |
atatgatcaagctgcgattttaatgagtggtagaaatgccaaaacaaatttcccaataacacaaactcctgaaggtgatccaaaaagcattacaagtaat |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
47101364 |
atatgatcaagctgcgattttaatgagtggtagaaatgccaaaacaaatttcccaataacacaaacttctgaaggtgatccaaaaagcattacaagtaat |
47101265 |
T |
|
| Q |
314 |
gagaacaaaccttcaacttcaaaggatctagaagaaattttacatgcaaaacttcgaaaatgtagcaaggtaccatctccttccatgacttgtttaaggc |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47101264 |
gagaacaaaccttcaacttcaaaggatctagaagaaattttacatgcaaaacttcgaaaatgtagcaaggtaccatctccttccatgacttgtttaaggc |
47101165 |
T |
|
| Q |
414 |
ttgacacagagaactctcacattggtgtgtggcaaaagcgtgctgggaagtgttctgaatcaaattgggttatgactgttcagcttggcaaaaagatgag |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
47101164 |
ttgacacagagaactctcacattggtgtgtggcaaaagcgtgctgggaagtgttctgaatcaaattgggttatgactgttcagcttgggaaaaagatgag |
47101065 |
T |
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| Q |
514 |
tgtaacccaagatagtggtagtagcagtagtagtgtggcaccttcat |
560 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47101064 |
tgtaacccaagatagtggtagtagcagtagtagtgtggcaccttcat |
47101018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 149 - 267
Target Start/End: Complemental strand, 2428755 - 2428637
Alignment:
| Q |
149 |
atttgaaataggaagagaagggtgtggctaggaacatttgaaacagcagaagaagcagcaagagcatatgatcaagctgcgattttaatgagtggtagaa |
248 |
Q |
| |
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|||||||||||||| || ||||| ||| ||||||||||||| ||||| ||||||||||| |||||||||||| |||| || ||| |||||||||| |||| |
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| T |
2428755 |
atttgaaataggaaaaggagggtttggttaggaacatttgagacagctgaagaagcagctagagcatatgatgaagcagccattctaatgagtggaagaa |
2428656 |
T |
|
| Q |
249 |
atgccaaaacaaatttccc |
267 |
Q |
| |
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|||| |||||||||||||| |
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| T |
2428655 |
atgcaaaaacaaatttccc |
2428637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 156 - 225
Target Start/End: Original strand, 1726241 - 1726310
Alignment:
| Q |
156 |
ataggaagagaagggtgtggctaggaacatttgaaacagcagaagaagcagcaagagcatatgatcaagc |
225 |
Q |
| |
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||||||||| ||| | ||| ||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
1726241 |
ataggaagacaagaatatggttaggaacatttgaaacagcagaagatgcagcaagagcatatgatgaagc |
1726310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 358 - 447
Target Start/End: Complemental strand, 2428534 - 2428445
Alignment:
| Q |
358 |
tgcaaaacttcgaaaatgtagcaaggtaccatctccttccatgacttgtttaaggcttgacacagagaactctcacattggtgtgtggca |
447 |
Q |
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|||||||||| |||||||| ||||| ||| || |||||| | |||||| ||||||||||||| ||||| || ||| |||| |||||||| |
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| T |
2428534 |
tgcaaaacttagaaaatgttgcaagtcaccttcaccttccctcacttgtctaaggcttgacactgagaattcacactttggagtgtggca |
2428445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 161 - 244
Target Start/End: Original strand, 49532569 - 49532652
Alignment:
| Q |
161 |
aagagaagggtgtggctaggaacatttgaaacagcagaagaagcagcaagagcatatgatcaagctgcgattttaatgagtggt |
244 |
Q |
| |
|
||||||||||||||| ||||||||||||| || ||||||| ||||||||||||||||||||||||||| ||||| |||| |||| |
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| T |
49532569 |
aagagaagggtgtggttaggaacatttgagacggcagaagcagcagcaagagcatatgatcaagctgcaattttgatgaatggt |
49532652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 228
Target Start/End: Complemental strand, 43490126 - 43490075
Alignment:
| Q |
177 |
taggaacatttgaaacagcagaagaagcagcaagagcatatgatcaagctgc |
228 |
Q |
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| T |
43490126 |
taggaacatttgaaacagctgaagcagctgctagagcatatgatgaagctgc |
43490075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 155 - 258
Target Start/End: Complemental strand, 44648756 - 44648653
Alignment:
| Q |
155 |
aataggaagagaagggtgtggctaggaacatttgaaacagcagaagaagcagcaagagcatatgatcaagctgcgattttaatgagtggtagaaatgcca |
254 |
Q |
| |
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|||||||| || ||||||||| ||||||||||||||||||| ||||||||||| | |||||||||| |||| || ||||| |||||||| |||||||| | |
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| T |
44648756 |
aataggaaaaggagggtgtggttaggaacatttgaaacagctgaagaagcagctaaagcatatgatgaagcagcaattttgatgagtggaagaaatgcaa |
44648657 |
T |
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| Q |
255 |
aaac |
258 |
Q |
| |
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|||| |
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| T |
44648656 |
aaac |
44648653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 158 - 267
Target Start/End: Complemental strand, 2480667 - 2480558
Alignment:
| Q |
158 |
aggaagagaagggtgtggctaggaacatttgaaacagcagaagaagcagcaagagcatatgatcaagctgcgattttaatgagtggtagaaatgccaaaa |
257 |
Q |
| |
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|||||||||||||| |||||||| |||||||| |||||||| | ||||| ||||||||||||||||| || || || |||| ||| | ||||||||||| |
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| T |
2480667 |
aggaagagaagggtatggctaggtacatttgagacagcagaggctgcagccagagcatatgatcaagcggccatattgatgaatggaaaaaatgccaaaa |
2480568 |
T |
|
| Q |
258 |
caaatttccc |
267 |
Q |
| |
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| |||||||| |
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| T |
2480567 |
ccaatttccc |
2480558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 171 - 230
Target Start/End: Original strand, 10029996 - 10030055
Alignment:
| Q |
171 |
tgtggctaggaacatttgaaacagcagaagaagcagcaagagcatatgatcaagctgcga |
230 |
Q |
| |
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||||||| ||||||||||||||||| || |||||||||||||| |||||| |||| |||| |
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| T |
10029996 |
tgtggcttggaacatttgaaacagctgaggaagcagcaagagcttatgatgaagccgcga |
10030055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 33274324 - 33274267
Alignment:
| Q |
171 |
tgtggctaggaacatttgaaacagcagaagaagcagcaagagcatatgatcaagctgc |
228 |
Q |
| |
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||||||| ||||||||||| ||||| || |||||||| ||||| |||||| ||||||| |
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| T |
33274324 |
tgtggcttggaacatttgagacagctgaggaagcagctagagcttatgatgaagctgc |
33274267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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