View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14010_low_4 (Length: 532)
Name: NF14010_low_4
Description: NF14010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14010_low_4 |
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| [»] scaffold0248 (2 HSPs) |
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Alignment Details
Target: scaffold0248 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: scaffold0248
Description:
Target: scaffold0248; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 194 - 447
Target Start/End: Complemental strand, 17977 - 17718
Alignment:
| Q |
194 |
ataatgaagtgagtcaattctatttcttgaagatatctagctctacaacggtttcaaccacacaagggcttgagagagatctttatatggaagcacggtt |
293 |
Q |
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| T |
17977 |
ataatgaagtgagtcaattctatttcttgaagatgtctagctctgcaacggtttcaaccacacaagggcttgagagagatctttatatggaagcatggtt |
17878 |
T |
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| Q |
294 |
ttcaaagatgctgctaaaaatataaaacaaggtagaaaacagaaacaaaatttaagtaacatgttcaatgcaaattttacaata------aataatgtta |
387 |
Q |
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| T |
17877 |
ttcaaagatgctgctaaaactataaaacaaggtagaaaacagaaacaaaatttaagtaacatgttcaatgcaaattttacaataaacttcaataatgtta |
17778 |
T |
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| Q |
388 |
gatgatgataattaacctaaagatttgagcacttgctaaaagcaagacatctaaataaag |
447 |
Q |
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| T |
17777 |
gataatgataattaacctaaagatttgagcacttgctaaaagcaagacatctaaataaag |
17718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0248; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 11 - 185
Target Start/End: Complemental strand, 18183 - 18012
Alignment:
| Q |
11 |
cgaagaatatggggaaaatcagtttcataaatgaatcagatagatagatgacaacaaaattaaaggcccaaccttgaacttgttgcatcatctaccatat |
110 |
Q |
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| T |
18183 |
cgaagaatatggggaaaatcagtttcataaatcaatcagatagatagatgccaacaaaa-----ggcccaacgttgaacttgttgcatcatctaccatat |
18089 |
T |
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| Q |
111 |
--gtactaattaatgtcatgttatttttcatattttaacataatttaatctaatcttatttaattaagaaatcaaat |
185 |
Q |
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| T |
18088 |
atgtactaattaatgtcatgttatttttcatattttaacataatttaatctaatcttatttaattaagagatcaaat |
18012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 283 - 367
Target Start/End: Original strand, 1767161 - 1767243
Alignment:
| Q |
283 |
gaagcacggttttcaaagatgctgctaaaaatataaaacaaggtagaaaacagaaacaaaatttaagtaacatgttcaatgcaaa |
367 |
Q |
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| T |
1767161 |
gaagcaaggttttcaaatatgttactaaaactaaaaaacaagaaagaaaacagaaac--aatttaagtagcatgttcaatgcaaa |
1767243 |
T |
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