View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14010_low_5 (Length: 529)
Name: NF14010_low_5
Description: NF14010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14010_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 7e-81; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 9596675 - 9596488
Alignment:
| Q |
19 |
gtttatatgtatgttgtaggaactatccaaaatttcaacaagtggaggcataattatttataaatatttgtacagaaatatataagttcataagccaaaa |
118 |
Q |
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| T |
9596675 |
gtttatatgtatgttgtaggaactatccaaaatttcaacaagtggaggcataattatttataaatatttgtacagaaatatataagttcgtaagcgaaaa |
9596576 |
T |
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| Q |
119 |
aatgatggaaattaattagaaattagaaattataccattttatatcgaattttctaatttctttccatgagagttttgttatatcccaaggtgat |
213 |
Q |
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| T |
9596575 |
aatgatggaaattaattagaa-------attataccattatatatcgaattttctaatttcattccatgagagttttgttatatcccaaggtgat |
9596488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 408 - 516
Target Start/End: Complemental strand, 9595893 - 9595789
Alignment:
| Q |
408 |
cttcaaagtgttagggtgcacatgaattgagttcacgtacgtatacctactcaaaatgagtttatggagactgacgtgaacttcattcatgtatcttcaa |
507 |
Q |
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| T |
9595893 |
cttcaaagtgttagggtgcacatgaattgagttcacgta----tacctactcaaaatgagttcatggagactgacgtgaacttcattcatgtatcttcaa |
9595798 |
T |
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| Q |
508 |
ttttcatat |
516 |
Q |
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| T |
9595797 |
ttttcatat |
9595789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 228 - 266
Target Start/End: Complemental strand, 9596463 - 9596425
Alignment:
| Q |
228 |
cgactaattcttattcaaattttcaatcagtacccatat |
266 |
Q |
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| T |
9596463 |
cgactaattcttattcaaattttcaatcagtacccatat |
9596425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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