View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14010_low_7 (Length: 435)
Name: NF14010_low_7
Description: NF14010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14010_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 4 - 260
Target Start/End: Complemental strand, 1917190 - 1916931
Alignment:
| Q |
4 |
acatcatcaattcatagccacaaaaaattcaaaccaataaaaataagaacgagtacaatacttatacgatgtttggataaacaacttaatcaagcgc--a |
101 |
Q |
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| T |
1917190 |
acatcttcaattcatagccacaaaaaattcaaaccaataaaaataagaacaagtacaatacttatacaatgtttggataaacaacttaatcaagcgcata |
1917091 |
T |
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| Q |
102 |
aacacttataagaatgtttctcaaatttattgaaatagcttataatatatctataaacaattc-gctaaagtggttaataaactccaccaatgacgaatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
1917090 |
aacacttataagaatgtttctcaaatttattgaaatagcttataatatatctataaacaattcagctaaagtggttaataaactccaccaatgagaaatt |
1916991 |
T |
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| Q |
201 |
gtttaggagatcctgagtttaattcgagggtagaataattattagtcagactttacttac |
260 |
Q |
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| T |
1916990 |
gtttaagagaacctgagtttaattcgagggtagaacaattattggttagactttacttac |
1916931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 261 - 419
Target Start/End: Complemental strand, 1916828 - 1916670
Alignment:
| Q |
261 |
aagcacttatgccataatcactaaataaaattgannnnnnnncaaacagacctttaatactagaaaggcctattagtattaccctatgaccccaagaaga |
360 |
Q |
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| T |
1916828 |
aagctcttacgccataatcactaaataaaattgattttttttcaaacagacctttaatactagaaaggcctattagtattaccctatgaccccaagaaga |
1916729 |
T |
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| Q |
361 |
gcaattttaaataggatggagaaactgagttgaggaaccactcttgatctggaaaaaga |
419 |
Q |
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| T |
1916728 |
gcaattttaaataggatggagaaactgagttgaggaaccactcttgatctggaaaaaga |
1916670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 417
Target Start/End: Complemental strand, 1878427 - 1878348
Alignment:
| Q |
338 |
attaccctatgaccccaagaagagcaattttaaataggatggagaaactgagttgaggaaccactcttgatctggaaaaa |
417 |
Q |
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| T |
1878427 |
attaccctatcgccccaagaagcacaattttgcataatatggaaaaactgagtggaggaaccactcttgatctgcaaaaa |
1878348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 417
Target Start/End: Complemental strand, 1884432 - 1884353
Alignment:
| Q |
338 |
attaccctatgaccccaagaagagcaattttaaataggatggagaaactgagttgaggaaccactcttgatctggaaaaa |
417 |
Q |
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| T |
1884432 |
attaccctatcgctccaagaagcacaattttgcatattatggagaaactgagtggatgaaccactcttgatctgcaaaaa |
1884353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 100
Target Start/End: Complemental strand, 3204732 - 3204704
Alignment:
| Q |
72 |
atgtttggataaacaacttaatcaagcgc |
100 |
Q |
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| T |
3204732 |
atgtttggataaacaacttaatcaagcgc |
3204704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 224
Target Start/End: Complemental strand, 16263185 - 16263126
Alignment:
| Q |
165 |
gctaaagtggttaataaactccaccaatgacgaattgtttaggagatcctgagtttaatt |
224 |
Q |
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| T |
16263185 |
gctaaagtggttaatgagccccaccaaggatgaattgtttaggagaacctgagttcaatt |
16263126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 256
Target Start/End: Complemental strand, 6737571 - 6737499
Alignment:
| Q |
184 |
tccaccaatgacgaattgtttaggagatcctgagtttaattcgagggtagaataattattagtcagactttac |
256 |
Q |
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| T |
6737571 |
tccaccaagaacgaattgtttaggagaacctgagttcgattcgtgggtggaatagttcttggccagactttac |
6737499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 101
Target Start/End: Original strand, 40667361 - 40667389
Alignment:
| Q |
73 |
tgtttggataaacaacttaatcaagcgca |
101 |
Q |
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| T |
40667361 |
tgtttggataaacaacttaatcaagcgca |
40667389 |
T |
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