View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14010_low_8 (Length: 421)
Name: NF14010_low_8
Description: NF14010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14010_low_8 |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 18079817 - 18079410
Alignment:
| Q |
1 |
atgtaagtaatccaaaagaaataagaagnnnnnnnntggagccatgaagcatgggcaaagcaacacacattaataaaaccatagagaaaaaagcaagaa- |
99 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
18079817 |
atgtaagtaatccaaaagaaataagaagaaaaaaaatggagccatgaagcatgggcaaagcaacacacattaataaaacgatagagaaaaaagcaagaag |
18079718 |
T |
|
| Q |
100 |
--atggacagcaagaagtgagacattttgacgaaaaagtacattgtctctttgctgctatatccttctcgaccatttgttcttcatccgatcatcttaaa |
197 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
18079717 |
aaatggacagcaagaagtgagacatttggacgaaaaagtacattgtctctttgctgctatatccttctcgaccatttgttcttcatccaatcgtcttaaa |
18079618 |
T |
|
| Q |
198 |
tatggaagaagtctttcagcatatacttggagagctcgacctcatggttgatgttggtttttgtcttcattttaattgcctgtagtgaaccagattatca |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18079617 |
tatggaagaagtctttcagcatatacttggagagctcgacctcatggttgatgttggtttttgtcttcattttaattgcctgtagtgaaccagattatca |
18079518 |
T |
|
| Q |
298 |
catttcaaatatagaatacaacaaatcacatcaatagttaatctaaaaaggggagaaacagaacctcaattacgtaaacacatgtaataccaaattcaaa |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18079517 |
catttcaaatatagaatacaacaaatcacatcaatagttaatctaaaaaggggagaaacagaacctcaattacgtaaacacatgtaataccaaattcaaa |
18079418 |
T |
|
| Q |
398 |
catatata |
405 |
Q |
| |
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|||||||| |
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| T |
18079417 |
catatata |
18079410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 51480173 - 51479832
Alignment:
| Q |
1 |
atgtaagtaatccaaaagaaataagaagnnnnnnnntggagccatgaagcatgggcaaagcaacacacattaataaaaccatagagaaaaaagcaagaa- |
99 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
51480173 |
atgtaagtaatccaaaagaaagaagaagaaaaaa---ggagccatgaagcatgggcaaagcaacacacattaataaaaggatagagaaaaaagcaagaag |
51480077 |
T |
|
| Q |
100 |
--atggacagcaagaagtgagacattttgacgaaaaagtacattgtctctttgctgctatatccttctcgaccatttgttcttcatccgatcatcttaaa |
197 |
Q |
| |
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|||||||||||||| |||||| ||| ||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||| ||| ||||||| |
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| T |
51480076 |
aaatggacagcaagaaatgagacttttggacgaaaaagtaccttgtctctttgcttctatctccttctcgaccatttgttcttcatccaatcgtcttaaa |
51479977 |
T |
|
| Q |
198 |
tatggaagaagt-ctttcagcatatacttggagagctcgacctcatggttgatgttggtttttgtcttcattttaattgcctgtagtgaaccagattatc |
296 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||||| |||||||||| ||||||||| ||||||| |||||||| ||||||||||||||||| ||| |
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| T |
51479976 |
tatggaagaagttctttcaccatatacttggagagctcgaactcatggttgttgttggtttctgtcttcgttttaatttcctgtagtgaaccagatgatc |
51479877 |
T |
|
| Q |
297 |
acatttcaaatatagaatacaacaaatcacatcaatagttaatct |
341 |
Q |
| |
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||||||||||| |||||||||||||||||||| |||||||||||| |
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|
| T |
51479876 |
acatttcaaatgtagaatacaacaaatcacatgaatagttaatct |
51479832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 42 - 354
Target Start/End: Original strand, 30207205 - 30207522
Alignment:
| Q |
42 |
ccatgaagcatgggcaaagcaacacacattaataaaaccataga--gaaaaaagcaagaa---atggacagcaagaagtgagacattttgacgaaaaagt |
136 |
Q |
| |
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|||||||||||| | || ||||| | ||||||||||| ||||| |||||||||||||| ||| | |||||||||||||| || || |||||| | |
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| T |
30207205 |
ccatgaagcatgagaaacgcaactcgcattaataaaaggatagatagaaaaaagcaagaagaaatgaattgcaagaagtgagactcttggaggaaaaa-t |
30207303 |
T |
|
| Q |
137 |
acattgtctctttgctgctatatccttctcgaccatttgttcttcatccgatcatcttaaatatggaagaagt-ctttcagcatatacttggagagctcg |
235 |
Q |
| |
|
|| ||||||||||||| |||| ||||||||| ||||||||||||||||| || ||||||||| ||||||||| ||||| |||||||||||||||||| |
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| T |
30207304 |
accttgtctctttgcttctatctccttctcggccatttgttcttcatccaattgtcttaaatacggaagaagtattttcaacatatacttggagagctca |
30207403 |
T |
|
| Q |
236 |
acctcatggttgatgttggtttttgtcttcattttaattgcctgtagtgaaccagattatcacatttcaaatatagaatacaacaaatcacatcaatagt |
335 |
Q |
| |
|
|||||||||| ||| ||||| | ||| |||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||| |||||| |
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| T |
30207404 |
acctcatggtcattgtaggtttctcgcttatctttaattgcctgtagtaaaccagattatcacatttcaaatgtagaatgcaacaaatcacaagaatagt |
30207503 |
T |
|
| Q |
336 |
taatctaaaaaggggagaa |
354 |
Q |
| |
|
| ||||| || |||||||| |
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| T |
30207504 |
tgatctataagggggagaa |
30207522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 95 - 327
Target Start/End: Complemental strand, 51497118 - 51496884
Alignment:
| Q |
95 |
aagaaatggacagcaagaagtgagacattttgacgaaaaagtacattgtctctttgctgctatatccttctcgaccatttgttcttcatccgatcatctt |
194 |
Q |
| |
|
|||||||||| ||||||||| |||| ||| || ||||| ||| |||| |||||||| |||| |||||||| ||||||| ||||||||| | | ||| |
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|
| T |
51497118 |
aagaaatggattgcaagaagtaagacttttggaggaaaatataccttgtatctttgcttctatctccttctcagccatttgctcttcatccaaacgactt |
51497019 |
T |
|
| Q |
195 |
aaatatggaagaagt-ctttcagcatatacttggagagctcgacctcatggttgatgttggtttttgtcttcattttaattgcctgtagtgaaccagatt |
293 |
Q |
| |
|
|||||||||| |||| ||||||||||||| |||||| |||| ||||||||| || ||||||||| |||||| |||||||| |||| ||||| | ||||| |
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| T |
51497018 |
aaatatggaaaaagtactttcagcatatatttggagggctcaacctcatggctgttgttggtttccgtcttctttttaatttcctgcagtgaccaagatt |
51496919 |
T |
|
| Q |
294 |
at-cacatttcaaatatagaatacaacaaatcaca |
327 |
Q |
| |
|
|| | ||||| |||| |||||||||| |||||||| |
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|
| T |
51496918 |
atccccattttaaatgtagaatacaaaaaatcaca |
51496884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 353 - 407
Target Start/End: Complemental strand, 51479401 - 51479347
Alignment:
| Q |
353 |
aaacagaacctcaattacgtaaacacatgtaataccaaattcaaacatatatatg |
407 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
51479401 |
aaacagaaccgcaattacgtaaacacatgtaacgccaaattcaaacatatatatg |
51479347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 240
Target Start/End: Complemental strand, 51455535 - 51455436
Alignment:
| Q |
142 |
gtctctttgctgctatatccttctcgaccatttgttcttcatccgatcatcttaaatatggaagaagt-ctttcagcatatacttggagagctcgacctc |
240 |
Q |
| |
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||||||| ||| || | |||||||| | |||||||||| ||||| | | |||||||| |||||||||| ||||||||| |||||| |||| ||| ||||| |
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|
| T |
51455535 |
gtctcttggcttctctttccttctcaatcatttgttctgcatccaaccgtcttaaatgtggaagaagtcctttcagcagatacttagagaactcaacctc |
51455436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 129 - 235
Target Start/End: Complemental strand, 27396064 - 27395957
Alignment:
| Q |
129 |
gaaaaagtacattgtctctttgctgctatatccttctcgaccatttgttcttcatccgatcatcttaaatatggaagaag-tctttcagcatatacttgg |
227 |
Q |
| |
|
|||||| ||| |||| ||| ||| |||| ||||||||| |||||||||||| |||| ||| | |||||| ||||||||| |||| ||||||||||||| |
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|
| T |
27396064 |
gaaaaaataccttgtaacttggcttctatctccttctcggccatttgttcttgatccaatcgtattaaatgtggaagaagagctttgagcatatacttgg |
27395965 |
T |
|
| Q |
228 |
agagctcg |
235 |
Q |
| |
|
||| |||| |
|
|
| T |
27395964 |
agaactcg |
27395957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 230
Target Start/End: Original strand, 137941 - 138043
Alignment:
| Q |
129 |
gaaaaagtacattgtctctttgctgctatatccttctcgaccatttgttcttcatccgatcatcttaaatatggaagaag-tctttcagcatatacttgg |
227 |
Q |
| |
|
|||||| ||| |||| |||| ||| |||| |||||||| ||||||||||| ||| || |||||||||||||||||| | ||||||||||||||||| |
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| T |
137941 |
gaaaaaataccttgtatcttggcttctatctccttctcagccatttgttctagatctaattctcttaaatatggaagaaggtatttcagcatatacttgg |
138040 |
T |
|
| Q |
228 |
aga |
230 |
Q |
| |
|
||| |
|
|
| T |
138041 |
aga |
138043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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